PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0000s0161.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 862aa    MW: 94258.2 Da    PI: 5.8942
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0000s0161.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.5e-182178457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            ++t+eq+e+Le +++++++ps  +r++L k +    +++ +q+kvWFqNrR +ek+
  Sphfalx0000s0161.1.p 21 YVRYTNEQVEALEHVYHECPKPSSIRRQQLVKDCpilaHIEPKQIKVWFQNRRCREKQ 78
                          6789****************************************************97 PP
2START144.78.6e-461923982203
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+ +e+++ka+ ++  W +++ +++g+  + +++ s+++ g a+ra+ +v  ++   v+e+l+d++ W  ++ + ++l   ++g  
  Sphfalx0000s0161.1.p 192 IAEETVTEFISKATGTAIDWIQLPGMKPGPHAIGIVAISHGCLGVAARACSLVGLEPS-KVAEVLKDRPSWLPDCHRLSILSSFTTGng 279
                           7899******************************************************.9999999999******************** PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l++++++a+++l+p Rdf+++Ry+  l+    vi+++S++   + p     +s+vRae lpSg+li p+++g++ +++v+h+dl+
  Sphfalx0000s0161.1.p 280 GTVELIYTQMYAPTTLAPpRDFYTLRYTTILENRNMVICERSLSGAHEGPMlppVQSFVRAEILPSGYLISPCEGGGCIIHIVDHMDLQ 368
                           *********************************************99999888899********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrq 203
                             +++++lr+l++s+++ ++kt+ ++l+++
  Sphfalx0000s0161.1.p 369 PCSVPEVLRPLYSSSAILAQKTTIRALRHL 398
                           ***********************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.4E-151783IPR001356Homeobox domain
CDDcd000869.03E-162080No hitNo description
SuperFamilySSF466891.33E-162081IPR009057Homeodomain-like
PfamPF000461.2E-152178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-172278IPR009057Homeodomain-like
PROSITE profilePS5007114.7382379IPR001356Homeobox domain
PROSITE profilePS5084823.525182383IPR002913START domain
CDDcd088752.05E-69188399No hitNo description
Gene3DG3DSA:3.30.530.203.0E-20189374IPR023393START-like domain
SuperFamilySSF559611.37E-34191398No hitNo description
SMARTSM002341.7E-30191401IPR002913START domain
PfamPF018527.9E-43192398IPR002913START domain
PfamPF086702.5E-43719860IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MQQQEDHHYS GMDSFIMCGK YVRYTNEQVE ALEHVYHECP KPSSIRRQQL VKDCPILAHI  60
EPKQIKVWFQ NRRCREKQRQ DSSRLLSVNA KLAALNKLLM EENERLSKHS LQLTLENHIL  120
RQELQQMPAA SLGGIRNQLD QAALASTETS SDSVVSGGGL HPQATPQHSP QAPSPAADEL  180
VVSLTEIQLL SIAEETVTEF ISKATGTAID WIQLPGMKPG PHAIGIVAIS HGCLGVAARA  240
CSLVGLEPSK VAEVLKDRPS WLPDCHRLSI LSSFTTGNGG TVELIYTQMY APTTLAPPRD  300
FYTLRYTTIL ENRNMVICER SLSGAHEGPM LPPVQSFVRA EILPSGYLIS PCEGGGCIIH  360
IVDHMDLQPC SVPEVLRPLY SSSAILAQKT TIRALRHLQG LAQEASGDNL PQNAQQPAAL  420
RTLSHRLSRG FNQAVNGFLE DGWAATVSDD MDDVTVMINE SPTTKCGQFG SEQLLCTLGG  480
GILCAKASML LQNVPAALLI QFLREHRSEW ADCDIDAHAA AAFHNTTHSD TTGHYRLSLP  540
LAKSSEQEEI LEVMKLEQNA GDANGIHMRD NFVLQLCSGI DKNAVGVCSQ LVFAPVDVTL  600
SDDDPLLPSG FCVIPLDCHI VGGSGLSRTH DLTSTLEGGP EVTGLRTHET GTVSSNHLRS  660
VLMIAFQFVY EAQTRETCAA VAHQYVCSVV ASVQRVAIAL APAHPAPRQS PTSANAAVLA  720
RHILQSYRLN LGIDLVEIDA GDDDSQFEIF WQHSDAILCC AWKGFPQFLF ANRAGLNMLE  780
TTSGALQDML WEKTLDEEGQ KSIYADFTRV LQQGYAYLPA GVRISSTGRR VNYDKALAWK  840
VVAKDDSIQC IAFLFMNWSF S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399215.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024399216.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024399218.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024399219.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0Y0G9Y60.0A0A0Y0G9Y6_9BRYO; C3HDZ1 (Fragment)
STRINGPP1S15_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]