PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0000s0040.4.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 519aa MW: 57457.7 Da PI: 7.692

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0000s0040.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.8	9.2e-32	286	339	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Sphfalx0000s0040.4.p 286 PRMRWTNSLHQQFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 339 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.87E-16	283	339	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-28	284	339	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-24	285	339	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-8	287	338	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MQESFFTKSL NSSNEEAAHI IIPPAVAGPD LSLQICPPNS YNQLQQQQPP SFPSGLVLAS 60 SNTPHEPMRY PDDFKHKMTP QDTLWLGDHQ NLQPWVNDAK LAAMPPGTVQ LNPISWNRSL 120 ARHAKAGQHE KSHEHIHCGF DLWERQQKSA NCNANSDMSY VSSPRKCYDH EASFGTTASR 180 PDLCIANPSL DLQAASDHGT FSLPAEEKTR GVLHNLQSEY VKPTVAGGLY HCLQSSSNSQ 240 SLLPNLMHIT AGDCTSISSN LQETTRILHC GFIMSKSPSK RSMRNPRMRW TNSLHQQFVH 300 AVELLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KTTRQNDFAE SPHNNGRNYG 360 EFLMAQGSLT NRGLETSTFL PKSSNYYSTL GDAQATLLLM QNKKPSQQEA SNLWHSPALI 420 PYSSNCIGLE QQLKATHTLS QDKGMENQWM MGLTSPSIKQ PPLQFSPPLS EFVSSHTTNI 480 IPKMPNLEFT LGTSGWSSTR GLDHGATDAP QGLFLLKC*

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MQESFFTKSL NSSNEEAAHI IIPPAVAGPD LSLQICPPNS YNQLQQQQPP SFPSGLVLAS  60
SNTPHEPMRY PDDFKHKMTP QDTLWLGDHQ NLQPWVNDAK LAAMPPGTVQ LNPISWNRSL  120
ARHAKAGQHE KSHEHIHCGF DLWERQQKSA NCNANSDMSY VSSPRKCYDH EASFGTTASR  180
PDLCIANPSL DLQAASDHGT FSLPAEEKTR GVLHNLQSEY VKPTVAGGLY HCLQSSSNSQ  240
SLLPNLMHIT AGDCTSISSN LQETTRILHC GFIMSKSPSK RSMRNPRMRW TNSLHQQFVH  300
AVELLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KTTRQNDFAE SPHNNGRNYG  360
EFLMAQGSLT NRGLETSTFL PKSSNYYSTL GDAQATLLLM QNKKPSQQEA SNLWHSPALI  420
PYSSNCIGLE QQLKATHTLS QDKGMENQWM MGLTSPSIKQ PPLQFSPPLS EFVSSHTTNI  480
IPKMPNLEFT LGTSGWSSTR GLDHGATDAP QGLFLLKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	287	341	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	287	341	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	287	341	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	287	341	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	287	341	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	287	341	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	287	341	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	287	341	4	58	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-34	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0000s0040.4.p