PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sphfalx0000s0040.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 538aa MW: 59579.1 Da PI: 7.6919

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0000s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.7	9.6e-32	298	351	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Sphfalx0000s0040.1.p 298 PRMRWTNSLHQQFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 351 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.05E-16	295	351	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	296	351	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-24	297	351	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-8	299	350	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MDLRFQASWN FTMQESFFTK SLNSSNEEAA HIIIPPAVAG PDLSLQICPP NSYNQLQQQQ 60 PPSFPSGLVL ASSNTPHEPM RYPDDFKHKM TPQDTLWLGD HQNLQPWVND AKLAAMPPGT 120 VQLNPISWNR SLARHAKAGQ HEKSHEHIHC GFDLWERQQK SANCNANSDM SYVSSPRKCY 180 DHEASFGTTA SRPDLCIANP SLDLQAASDH GTFSLPAEEK TRGVLHNLQS EYVKPTVAGG 240 LYHCLQSSSN SQSLLPNLMH ITAGDCTSIS SNLQETTRIL HCGFIMSKSP SKRSMRNPRM 300 RWTNSLHQQF VHAVELLGGH ERATPKSVLE LMNVKDLTLA HVKSHLQMYR TVKTTSKPLS 360 LPGQNDFAES PHNNGRNYGE FLMAQGSLTN RGLETSTFLP KSSNYYSTLG DAQATLLLMQ 420 NKKPSQQEAS NLWHSPALIP YSSNCIGLEQ QLKATHTLSQ DKGMENQWMM GLTSPSIKQP 480 PLQFSPPLSE FVSSHTTNII PKMPNLEFTL GTSGWSSTRG LDHGATDAPQ GLFLLKC*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MDLRFQASWN FTMQESFFTK SLNSSNEEAA HIIIPPAVAG PDLSLQICPP NSYNQLQQQQ  60
PPSFPSGLVL ASSNTPHEPM RYPDDFKHKM TPQDTLWLGD HQNLQPWVND AKLAAMPPGT  120
VQLNPISWNR SLARHAKAGQ HEKSHEHIHC GFDLWERQQK SANCNANSDM SYVSSPRKCY  180
DHEASFGTTA SRPDLCIANP SLDLQAASDH GTFSLPAEEK TRGVLHNLQS EYVKPTVAGG  240
LYHCLQSSSN SQSLLPNLMH ITAGDCTSIS SNLQETTRIL HCGFIMSKSP SKRSMRNPRM  300
RWTNSLHQQF VHAVELLGGH ERATPKSVLE LMNVKDLTLA HVKSHLQMYR TVKTTSKPLS  360
LPGQNDFAES PHNNGRNYGE FLMAQGSLTN RGLETSTFLP KSSNYYSTLG DAQATLLLMQ  420
NKKPSQQEAS NLWHSPALIP YSSNCIGLEQ QLKATHTLSQ DKGMENQWMM GLTSPSIKQP  480
PLQFSPPLSE FVSSHTTNII PKMPNLEFTL GTSGWSSTRG LDHGATDAPQ GLFLLKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	299	353	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	299	353	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	299	353	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	299	353	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	299	353	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	299	353	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	299	353	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	299	353	4	58	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-37	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0000s0040.1.p