PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_215960_sitf.t1
Common NameSOVF_215960
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GeBP
Protein Properties Length: 309aa    MW: 34135.9 Da    PI: 10.1197
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_215960_sitf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.86e-3268157197
             DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                        klfqr++se+Dei +L+G+i+++ak+g++p+ +id+fy fvkks++++v+k q+v+K+rrLKkKf + +kk       ++s++h+ ++fels
  Sp_215960_sitf.t1  68 KLFQRVFSEDDEIEILKGMIEYRAKRGADPMFEIDDFYGFVKKSVHVDVNKGQIVDKVRRLKKKFFNAKKK-------KLSNPHEIHAFELS 152
                        579*****************************************************************999.......9************* PP

             DUF573  93 kkiWg 97 
                        kkiW+
  Sp_215960_sitf.t1 153 KKIWD 157
                        ****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-2770157IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
ASKPAIETPS TASKPRSKST VAALAAEKRP SESELKTSSK KPRKEKSGSG AAPLAAVSPV  60
VHEEGSKKLF QRVFSEDDEI EILKGMIEYR AKRGADPMFE IDDFYGFVKK SVHVDVNKGQ  120
IVDKVRRLKK KFFNAKKKKL SNPHEIHAFE LSKKIWDING GDDVMEDDKI NNGAVEHNNN  180
NVWSSPKPKP RVLKLKTGGG GGVGGTSTGN GGVVLEEMKK KKEDNEGEKG GGKVSEFVEK  240
DVEFEVGEAV AWEKLRKKGL TMMGAKARAE IDEMWEKVAM KQAEAKILRS EVEQEETRRI  300
MEALRSGKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125138RRLKKKFFNAKKKK
2125139RRLKKKFFNAKKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850098.10.0GLABROUS1 enhancer-binding protein-like
TrEMBLA0A0K9Q6Q30.0A0A0K9Q6Q3_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010686932.12e-99(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.18e-20DNA-binding storekeeper protein-related transcriptional regulator