 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sp_215690_ridj.t1 |
| Common Name | SOVF_215690 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
| Family |
NAC |
| Protein Properties |
Length: 388aa MW: 43323.3 Da PI: 7.3434 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sp_215690_ridj.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 174.6 | 2.9e-54 | 23 | 148 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
lppGfrFhPtdeelvv+yLk+kv++++l++ +i+e+d+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v
Sp_215690_ridj.t1 23 LPPGFRFHPTDEELVVHYLKRKVQSTPLPV-AIIAEIDLYKFDPWELPAKAVFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPV 113
79****************************.88***************8777899************************************* PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
ls+++e+vg+kk Lvfy g+ p+g+kt+W+mheyr
Sp_215690_ridj.t1 114 LSTGNEKVGVKKALVFYGGKPPRGVKTNWIMHEYR 148
**********************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MDSTHSPAAG GSHHELQESH PQLPPGFRFH PTDEELVVHY LKRKVQSTPL PVAIIAEIDL 60
YKFDPWELPA KAVFGEQEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD KPVLSTGNEK 120
VGVKKALVFY GGKPPRGVKT NWIMHEYRWV DSTKPTNNKP PGYDHCNNKK GGSLRLDDWV 180
LCRIYKKSNT SRAMDHERED SMEDMMMMGT SLSSMSMSMS MSMSMSIPSS INNMGHDQPL 240
SKPTTNSLNY GSFLNTHVDQ QGLFEGMMGG GVHVHHQGMD PGTPTSMLPL KRSLPSLYWG 300
DNNDHDTSGG AICGAQSPSK RLSMLQMSID NTNNNNSSEE SGGRSDHHEN NNNNNNNITS 360
MSNLLNQLPT QTTPPPPLHQ QQQQQQQQ
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-77 | 11 | 192 | 1 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-77 | 11 | 192 | 1 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-77 | 11 | 192 | 1 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-77 | 11 | 192 | 1 | 170 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 6e-77 | 11 | 192 | 1 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 6e-77 | 11 | 192 | 1 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
