PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_213250_jxkz.t1
Common NameSOVF_213250
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 302aa    MW: 35004.1 Da    PI: 4.2729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_213250_jxkz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.6e-06185227855
                        HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        + r RR++i ++ +eL +l+P         K++ ae+ + A +Y+k +q
  Sp_213250_jxkz.t1 185 AARERRRKITEKTQELGKLIPGgH------KMNTAEMFQAASKYVKFMQ 227
                        6699*****************955......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.484177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-10179236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-9181242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-8183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.14E-8185231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALDWQNPNC FLNQNYPFEQ FQFHDPNHIL LPFEDDQTDL LCFDPLPPTL FDFDDSLFDP  60
LPLQQLDFDN NDLFTFNNNN GSYSPFSYVD FPPPEEILSF DDDFSSQFLP FPKKQKLSPC  120
FNDSTFVPDF FGVPCFNVDY LNDNNNHPNC YNYYNNGDEF CANFDQSYGD NNGRKVKTVS  180
AQSRAARERR RKITEKTQEL GKLIPGGHKM NTAEMFQAAS KYVKFMQAQL EILQSIKTLK  240
EENDNDAKLT NLPILSSQLV QEKLYSKEKC LVPLEFLPML EEHCDSEADP SISKQIKDLL  300
IH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855908.10.0transcription factor bHLH52-like
TrEMBLA0A0K9Q8H80.0A0A0K9Q8H8_SPIOL; Uncharacterized protein
STRINGXP_010677072.16e-79(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-27bHLH family protein