PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_213090_mhnw.t2
Common NameSOVF_213090
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family YABBY
Protein Properties Length: 167aa    MW: 18486.5 Da    PI: 8.0125
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_213090_mhnw.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY187.37.8e-58113824170
              YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppv 115
                        vsvP  s++++vtvrCGhC++llsvn+ ++   ++ +++   s++ +     + ++ + +s +++  s+s+++ +++ s+++d++ +r  p 
  Sp_213090_mhnw.t2   1 VSVPCCSIYNLVTVRCGHCANLLSVNIGVSPPSVPNQEN---SFQ-HY---SNYQDVSKDSSTMTGGSSSSTI-TTMTSDQHDDQQSRLSP- 83 
                        8***************************99988887776...322.22...2223333333333333333333.33557888888888888. PP

              YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        irPPekrqrvPsayn+fikeeiqrikasnP+ishreafsaaaknWahfP+ihfgl
  Sp_213090_mhnw.t2  84 IRPPEKRQRVPSAYNKFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFGL 138
                        9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-571138IPR006780YABBY protein
SuperFamilySSF470956.02E-883131IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.4E-586132IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
VSVPCCSIYN LVTVRCGHCA NLLSVNIGVS PPSVPNQENS FQHYSNYQDV SKDSSTMTGG  60
SSSSTITTMT SDQHDDQQSR LSPIRPPEKR QRVPSAYNKF IKEEIQRIKA SNPEISHREA  120
FSAAAKNWAH FPHIHFGLNL DLDGQRQARL DQAVAGIEGT NKSHGFY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861828.11e-124putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB02e-57YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0K9Q8J81e-122A0A0K9Q8J8_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010685466.14e-95(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-55YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]