![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_212960_zirp.t1 | ||||||||
Common Name | SOVF_212960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 27653.5 Da PI: 6.3524 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.6 | 2.9e-13 | 6 | 54 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 g+WT Ed+l+ +a +G + +W++Ia +++ gR++ ++++++ ++ Sp_212960_zirp.t1 6 GKWTRAEDKLFEEALVIFGEEvledRWHKIADHVP-GRSPAEVRDHYEDL 54 79*********************************.***********887 PP | |||||||
2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 117 | 161 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Sp_212960_zirp.t1 117 PWTEEEHRLFLIGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKY 161 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.922 | 1 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-10 | 4 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-9 | 6 | 55 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-11 | 6 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-12 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-11 | 7 | 55 | No hit | No description |
PROSITE profile | PS51294 | 19.909 | 110 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.42E-17 | 112 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-17 | 113 | 165 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.0E-11 | 114 | 164 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-12 | 114 | 160 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-12 | 117 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.25E-10 | 117 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MRGDLGKWTR AEDKLFEEAL VIFGEEVLED RWHKIADHVP GRSPAEVRDH YEDLLFDVDQ 60 IDSGRVELPS YSDEFGASWW GTESPSTRLN QISFGSDGVN SNTKPKQNDV ERKKGTPWTE 120 EEHRLFLIGL EKYGKGDWRS ISRNVVVTRT PTQVASHAQK YYLRQNSGKK ERKRSSIHDI 180 TTVDEKSGVH PAVEQNWIPP PGGNTMEHHH AGFQQMGASA SPSPPFSGNT TQGGSPFGYP 240 SFGFPM |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856464.1 | 0.0 | transcription factor DIVARICATA-like | ||||
TrEMBL | A0A0K9Q782 | 0.0 | A0A0K9Q782_SPIOL; Uncharacterized protein | ||||
STRING | XP_010695074.1 | 1e-128 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-67 | MYB family protein |