PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_211310_gisw.t2 | ||||||||
Common Name | SOVF_211310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 36529.3 Da PI: 8.4404 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.1 | 3.1e-08 | 159 | 206 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq Sp_211310_gisw.t2 159 SHSLAERVRREKIGERMKMLQALVPGC----DKVTGKALMLDEIINYVQSLQ 206 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.03E-9 | 153 | 210 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-16 | 153 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.186 | 155 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-16 | 155 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-5 | 159 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MAAFQQYPAS FLADSVFLSN FSAIKTPGVL DEFIPNLNQF YSASENSQMF YYKEINSSID 60 NELSSVTEKQ RTESLSMADK SDSDEQVTQN SVPVDKKRKS RKGSSPNSAN SKEVKQVKCK 120 KQKEDKAAMK VEKKDSNSNE EPPKGYIHVR ARRGQATDSH SLAERVRREK IGERMKMLQA 180 LVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSLKLASLD PMAYNFGLID DPMMYGTQAV 240 NNGMALQVPM MQQATSNGID PSQAFATTNP MSCSATATSS ATTTPTFPRS MADRSASLVQ 300 QEEKPSLLPL QLRRRRCQEC KLATGIEET |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021844788.1 | 0.0 | transcription factor bHLH137 isoform X2 | ||||
TrEMBL | A0A0K9Q7J7 | 0.0 | A0A0K9Q7J7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010678329.1 | 1e-127 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 2e-55 | bHLH family protein |