PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_211310_gisw.t1
Common NameSOVF_211310
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 345aa    MW: 38279.1 Da    PI: 6.3083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_211310_gisw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.3e-08159206455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Sp_211310_gisw.t1 159 SHSLAERVRREKIGERMKMLQALVPGC----DKVTGKALMLDEIINYVQSLQ 206
                        8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-16153222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.05E-10153210No hitNo description
PROSITE profilePS5088815.186155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-16155220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAAFQQYPAS FLADSVFLSN FSAIKTPGVL DEFIPNLNQF YSASENSQMF YYKEINSSID  60
NELSSVTEKQ RTESLSMADK SDSDEQVTQN SVPVDKKRKS RKGSSPNSAN SKEVKQVKCK  120
KQKEDKAAMK VEKKDSNSNE EPPKGYIHVR ARRGQATDSH SLAERVRREK IGERMKMLQA  180
LVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSLKLASLD PMAYNFGLID DPMMYGTQAV  240
NNGMALQVPM MQQATSNGID PSQAFATTNP MSCSATATSS ATTTPTFPRS MADRSASLVQ  300
QEEKPSLLPL QDVGSLYWGG VNEQQQQQSI INQLGFLPVE YHNSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844787.10.0transcription factor bHLH137 isoform X1
TrEMBLA0A0K9Q9N10.0A0A0K9Q9N1_SPIOL; Uncharacterized protein
STRINGXP_010678329.11e-135(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-55bHLH family protein