PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_207660_ozea.t1

Common Name

SOVF_207660

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 472aa MW: 51882.7 Da PI: 5.6678

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_207660_ozea.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F++ ++ +Hi ++ Sp_207660_ozea.t1 110 FECPVCGSGFTSEEEVSSHIESC 132 89******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	6.9E-8	9	36	No hit	No description
SuperFamily	SSF143503	1.44E-16	184	257	IPR018997	PUB domain
SMART	SM00580	1.6E-17	186	253	IPR018997	PUB domain
Pfam	PF09409	2.8E-16	187	260	IPR018997	PUB domain
CDD	cd09212	3.09E-20	187	258	No hit	No description
SuperFamily	SSF54236	7.75E-14	335	448	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	6.9E-8	352	446	No hit	No description
PROSITE profile	PS50033	13.079	364	448	IPR001012	UBX domain
Pfam	PF00789	1.7E-6	365	417	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MSSSSSSSGK FKGQGRVLGS SSSSSGPTNP NPIRPSSAAQ TVHPKPLITP PRFDQRPTSF 60 EGQKGSIPNP KSNPDSNPNH PSSIDGFDPF DSLITTGKRN KNGYSLNNVF ECPVCGSGFT 120 SEEEVSSHIE SCITAKTSNG SIDDAADLDS ASNPSMVMNS NENKVESTNK LEGCIGVYLS 180 GNPSDSSVDI VMRLFRNTVK EPENPKFRRI RMSNPKIREA IGEVTGGIEL LEEVGFELKE 240 EGGEMWAVMD TPSEEQLLML KNSVNLIEQA KSSSLSSSLK VASDKVEVEK KVKENEPLII 300 DRQIKVFFSV SESVAARITL PDSFYKLSSE EVRREAELRK KKMAESQLLI PKSFKEKQAQ 360 AARKRYTRTI IRVQFPDGVV LQGVFSPKES TSALYEFVSV ALKQEGLEFE LIHPVPLKRR 420 LIPCFPAPGE RASTLEQEDL VPSALVKFKP IETDSMMFTG LRNELLEISE PL

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MSSSSSSSGK FKGQGRVLGS SSSSSGPTNP NPIRPSSAAQ TVHPKPLITP PRFDQRPTSF  60
EGQKGSIPNP KSNPDSNPNH PSSIDGFDPF DSLITTGKRN KNGYSLNNVF ECPVCGSGFT  120
SEEEVSSHIE SCITAKTSNG SIDDAADLDS ASNPSMVMNS NENKVESTNK LEGCIGVYLS  180
GNPSDSSVDI VMRLFRNTVK EPENPKFRRI RMSNPKIREA IGEVTGGIEL LEEVGFELKE  240
EGGEMWAVMD TPSEEQLLML KNSVNLIEQA KSSSLSSSLK VASDKVEVEK KVKENEPLII  300
DRQIKVFFSV SESVAARITL PDSFYKLSSE EVRREAELRK KKMAESQLLI PKSFKEKQAQ  360
AARKRYTRTI IRVQFPDGVV LQGVFSPKES TSALYEFVSV ALKQEGLEFE LIHPVPLKRR  420
LIPCFPAPGE RASTLEQEDL VPSALVKFKP IETDSMMFTG LRNELLEISE PL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	2e-13	320	448	24	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021856232.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	1e-170	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A0K9Q8J0	0.0	A0A0K9Q8J0_SPIOL; Uncharacterized protein
STRING	XP_010679517.1	0.0	(Beta vulgaris)

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]