PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Sp_205640_chyq.t1

Common Name

SOVF_205640

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 220aa MW: 25578.5 Da PI: 6.1799

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_205640_chyq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00093	71	95	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H Sp_205640_chyq.t1 71 FFCDLCNKQYKLAMEFEAHLSSydH 95 67*****************987666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12171	8.4E-5	71	98	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	73	95	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
ITEPIKSGMR DPKLGIGKQE EDDYYTAEEN IQRRKLDIEV EETDEVARKR EVLAEREQKI 60 QTEVKEIRKV FFCDLCNKQY KLAMEFEAHL SSYDHNHRKR FKEMREMHGS NRDDRLKREM 120 QRQEKEMAKF SQIADARKQQ QTQEQEEQQQ QEQEQSGNTP VMDATTAASA PVDIDQRKAL 180 KFGFSAKSGT AKSSFNIAAK KKPKVPVVSI FGNDSDEDQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021858018.1	1e-160	G patch domain-containing protein 8
TrEMBL	A0A0K9QBA6	1e-160	A0A0K9QBA6_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010674479.1	1e-122	(Beta vulgaris)