PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_204520_eoji.t1 | ||||||||
Common Name | SOVF_204520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 276aa MW: 30993.3 Da PI: 6.6765 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.7 | 2e-08 | 163 | 210 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR +iN+++ L++++P + k + a +L + ++Y++sLq Sp_204520_eoji.t1 163 SHSIAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 210 8*************************9....35599999**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.15E-9 | 157 | 213 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-16 | 157 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-15 | 159 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.085 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-5 | 163 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-7 | 165 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MANYFTGNSN ILSTNNPFTF LDNDVSWELS NPFLAINQYL AQNSNLDHQS FIGFSHDQII 60 INPNDQTSEF HVKTAKDVQA NSAVSSGNGN ECSGNATNNK RKAEDLAESS SSLYSSSPTS 120 NDRARVKKNS SNRGKRSKSN DKEEGNLKEV VHVRARRGQA TDSHSIAERV RRGKINERLR 180 CLQDIVPGCY KTMGMAVMLD EIINYVQSLQ NQVDFLSMKL TAASQFYDFN AENEPAEKKQ 240 KIKICNSGET EEVERIISKE GYDQALPNFF QPTWPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021860746.1 | 0.0 | transcription factor BEE 3-like | ||||
Swissprot | Q8GWK7 | 3e-55 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | A0A0K9Q9H3 | 0.0 | A0A0K9Q9H3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010677996.1 | 1e-122 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 7e-56 | BR enhanced expression 1 |
Publications ? help Back to Top | |||
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