PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_204350_kxxj.t1
Common NameSOVF_204350
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 290aa    MW: 31507.2 Da    PI: 6.9618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_204350_kxxj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.58.7e-17121167455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Sp_204350_kxxj.t1 121 VHNMSEKRRRQRINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 167
                        6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-21114181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-20114177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.19117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-19120171No hitNo description
PfamPF000103.5E-14121167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-18123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAHLTPPHPP LSSTANSHFT LESDDISSLL HNLLHNTSRP STSNHPQPPP LPEDHGQFPG  60
STVFSESPAL LDPGFPFSGG YYSSGLPMEG IDDADCQSEE EARGKSASGK SSSKRSRAAE  120
VHNMSEKRRR QRINEKMKAL QKLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGSS  180
SHPFYLPGAV QLPSAGAVGE ANSSRAGSFA TDQESPTQAM FNLSSKPAFS DYKLLMSKMS  240
ESNSSAHAFV SEPPMTAHYR PFNASKVLCK DPMLPQLQLD MSHCGQSSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847957.10.0transcription factor ALC-like isoform X2
TrEMBLA0A0K9QBM40.0A0A0K9QBM4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010688822.11e-120(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-35bHLH family protein