PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_203360_nmyr.t1
Common NameSOVF_203360
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 344aa    MW: 36338.9 Da    PI: 7.1003
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_203360_nmyr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.42.1e-30126179155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Sp_203360_nmyr.t1 126 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 179
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.059123182IPR017930Myb domain
SuperFamilySSF466893.58E-20123183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-30125184IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-24127179IPR006447Myb domain, plants
PfamPF002491.4E-7129178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MREEDSNWFS RWDEDLPSPD ELISISQTLI TPDLASAFDI HSPRSNGNTP ISILHHHSAS  60
SPQLLSHYHH HGQQQQSSSA PQQPPPQPNS SEFDSSSAEL GGGGGGGGGG ATSGGGADEP  120
ARTLKRPRLV WTPQLHKRFV DAVAHLGIKN AVPKTIMQLM SVDGLTRENV ASHLQKYRLY  180
LKRMQGLNNG GGGGGGGVAG GPNGGLTGSG DAATDHLFAS SPVPAHFLHQ NGPGGGGGGR  240
PNSDHFMPYM PVAALNHHQM AAAVAGHQQI QAQYQHHHHR QMGHFGSAQG NGQFDHPFLS  300
RQAHLGPTRN GMMQSNSGFV EDVESGTANN GGRKVLTLFP TGED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-33126182157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864004.10.0transcription factor MYBC1-like
SwissprotO222101e-60MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A0K9QBX60.0A0A0K9QBX6_SPIOL; Uncharacterized protein
STRINGXP_010673075.11e-158(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.14e-79G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]