PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_200060_araf.t1
Common NameSOVF_200060
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 363aa    MW: 42051.3 Da    PI: 8.6802
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_200060_araf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.6e-156821799
                       E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       +lpkkf+ e+ ++k   + +++l+  +  sW+v+l  +k  +  ++ ++GW+eFvka  Lk  D++vFk+++r++f   v +f++
  Sp_200060_araf.t1  6 TLPKKFT-EYmKSK--LPEQIVLK-VNRVSWNVNL--KKEEDDiMFHGDGWEEFVKAYSLKKADILVFKYNRRESF--EVLLFDR 82
                       79****9.662444..55456655.589*******..888888466679**********************99999..7777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.14183IPR003340B3 DNA binding domain
SMARTSM010191.2E-5383IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-16582IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-14582IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-12682IPR003340B3 DNA binding domain
CDDcd100176.38E-14681No hitNo description
Gene3DG3DSA:2.40.330.106.8E-14253350IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-11254350No hitNo description
SuperFamilySSF1019368.83E-13254350IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-7255337IPR003340B3 DNA binding domain
SMARTSM010190.0019255352IPR003340B3 DNA binding domain
PROSITE profilePS5086310.221255352IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCYNQTLPKK FTEYMKSKLP EQIVLKVNRV SWNVNLKKEE DDIMFHGDGW EEFVKAYSLK  60
KADILVFKYN RRESFEVLLF DRASLCEQEA SYFVRKVQQN SDDDKEDHDR SEKTRKDLTG  120
DKSQEDYDSE SSAPRNRRKK NPASTPKSNS GRTARAKEDL DDEDESDESS DEEDSISEEA  180
KTTPNKTATA IARESPPSSS RKRKRNGDKK ITGNESSFSL HQMCYRSNRR EITEEEKANA  240
LTKAKMASVQ FKDSFIVVMR PTCVYKRFYL TIPSDWKPRI RYRKGQQVCL IVKEKTWDCR  300
VSFSRNNIGF QGAGWKKFAR ENLLEEFDVC VFVPCGAKNE RSILDVSIFR VVPEAVPPTL  360
VTP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840512.10.0B3 domain-containing protein REM16-like
RefseqXP_021847517.10.0B3 domain-containing protein REM16-like
TrEMBLA0A0K9QAX00.0A0A0K9QAX0_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-33B3 family protein