PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_199490_ehdm.t1

Common Name

SOVF_199490

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 285aa MW: 31197.6 Da PI: 6.6299

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_199490_ehdm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	8.1e-09	14	59	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE++RR r+N+ f eL l ++ +K++Ka+iL +v+ +k+L Sp_199490_ehdm.t1 14 KAGREKQRRCRLNEQFIELGNTLDSD----RPKNDKATILSDTVQLLKDL 59 5669*******************8....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.208	9	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.21E-5	10	63	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.2E-12	10	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.15E-11	10	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-6	14	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-6	15	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDYEDPTAVR KLQKAGREKQ RRCRLNEQFI ELGNTLDSDR PKNDKATILS DTVQLLKDLT 60 AEVDKLKAEH AALSDESREL TQEKNDLREE KTALKSDIDR LGAQCQQRVG PAAAYPWVAM 120 DSVLQHPPSY PYPMPIPGPI PMHHMSMQPY PFFGSPNPGM YANPCSTFIP YMAPNPPPEH 180 PSTQDVSPPL QPGSRTQVSA RQGIGTSSDK HERQVNRNEN SSDVPTNLEL KTPGSTTDEN 240 TSSRDKSRKR SIAADGSSLS RCSSHSVQDS SSSSIVGGGG GKGND

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021846757.1	0.0	transcription factor bHLH121-like
Refseq	XP_021846758.1	0.0	transcription factor bHLH121-like
Swissprot	Q9LT23	4e-70	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A0K9QB23	0.0	A0A0K9QB23_SPIOL; Uncharacterized protein
STRING	XP_010690442.1	1e-149	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-67	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]