PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_199270_qtpw.t1 | ||||||||
Common Name | SOVF_199270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | AP2 | ||||||||
Protein Properties | Length: 389aa MW: 40797.3 Da PI: 6.5094 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.6 | 2.1e-15 | 81 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Sp_199270_qtpw.t1 81 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 132 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00367 | 1.4E-5 | 66 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-18 | 81 | 142 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.08E-26 | 81 | 142 | No hit | No description |
Pfam | PF00847 | 4.5E-10 | 81 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-18 | 82 | 141 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-33 | 82 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.216 | 82 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 122 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MGSSGQQQPP LTTVNNGETS GDNNNSSSTD GGAALSAAVV TTAITPVVEA TPRRSLDTFG 60 QRTSIYRGVT RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTEEEAA 120 EAYDIAAIKF RGLNAVTNFD MSRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM 180 LALSNSTYPY GAASSSGSTR YGAHPNTYPL LPYHHQQDTQ PQPLLTLHNN LGSQESYTHQ 240 EAQFLQLYQQ SSYSNPSSMY HSYQLQTNPN LLHGFMGMGS DSSGCVIDGT NNNNGSSSGG 300 SYSGGGGGCG GGGGYLGSGV GINGMGSASS TSNVVGPDET DHQPLAMVKV DYDMHPSGGG 360 GGGDGGSYAG WSTETVQGPN NGVFAMWND |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021861890.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Refseq | XP_021861894.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 4e-90 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A0K9QD64 | 0.0 | A0A0K9QD64_SPIOL; Uncharacterized protein | ||||
STRING | XP_010673600.1 | 1e-148 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 2e-71 | AP2 family protein |