PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_198230_yrna.t1 | ||||||||
Common Name | SOVF_198230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | AP2 | ||||||||
Protein Properties | Length: 463aa MW: 50270.8 Da PI: 8.7094 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.7e-17 | 145 | 194 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Sp_198230_yrna.t1 145 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 194 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-9 | 145 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-15 | 145 | 202 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-16 | 146 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.88E-11 | 146 | 204 | No hit | No description |
SMART | SM00380 | 1.2E-31 | 146 | 208 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.82 | 146 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.23E-11 | 238 | 283 | No hit | No description |
SuperFamily | SSF54171 | 6.02E-6 | 238 | 282 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-11 | 239 | 287 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MNDEGSATNT ELSGTSSASS LVNATAEESP ISGAGEFDFF SKHSSADVSP FVTRQLFPMN 60 EGDNGGGSVG YDGGGDGTRE MELLRLGSSS STPRSMPTNH NSNSNQWLNL SVLGSGPGSG 120 VGTEQQNNAK QQVRRSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA 180 AARAYDRAAI KFRGVDADIN FTIADYEDDM KQQMKNLSKE EFVHILRRQS TGFSRGSSRY 240 RGVTLHKCGR WEARMGQFLG KKAYDKAAIQ CNGREAVTNF ESSSYQGQIP IMQPNNQGDG 300 QNLDLNLGIS ITIDKGAGES QPHHPPLHLP NGNWPANGSY FIPGAPQLYG QPLASRQSTP 360 MWSGLPPGRP ATYEERVSDQ QKLEAIAGSA RLPNWGWYMQ NQGGQGGGSG GTANQVQQLS 420 NAASSGFSSF STTTTSSANY PFTTLHNDFH NNNNNNNNHT QGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021865446.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | Q9SK03 | 2e-90 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A0K9QBF4 | 0.0 | A0A0K9QBF4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010693088.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 5e-84 | related to AP2.7 |