PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_197950_fmps.t1
Common NameSOVF_197950
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 346aa    MW: 39436.5 Da    PI: 4.3692
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_197950_fmps.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.85.4e-1651501126
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv...ePwdLpk.....kvkaeekewyfFsk....rdkkyatgkrknratk 79 
                        l+pGf+F+Ptdeel++++L +k++g ++++    ++++++y     +P+++         ++e++  yfF++    ++kk  +gk+  r++ 
  Sp_197950_fmps.t1   5 LMPGFQFDPTDEELINFFLWRKIHGVPTPAVYPrMPDANVYGKkgdHPSQIFDsfgesDREEEDTVRYFFTRlvpvSKKKGCNGKNVVRSVG 96 
                        689************************88866669999999755559***96334433222344455***9733223444458889999877 PP

                NAM  80 sg..yWkatgk.dkevlsk...kgelvglkktLvfykg.rapkgektdWvmhey 126
                        sg  +W++  + + +v++k   ++ ++g ++ L f ++    ++ + +W m e 
  Sp_197950_fmps.t1  97 SGddFWRNERSeSVKVKNKdggQDIKIGSRTYLKFIDQtGVANPDRVEWSMREL 150
                        66337*97765155666666655566**********552667789******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-182166IPR003441NAC domain
PROSITE profilePS5100519.7045166IPR003441NAC domain
PfamPF023656.4E-127149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSMNLMPGFQ FDPTDEELIN FFLWRKIHGV PTPAVYPRMP DANVYGKKGD HPSQIFDSFG  60
ESDREEEDTV RYFFTRLVPV SKKKGCNGKN VVRSVGSGDD FWRNERSESV KVKNKDGGQD  120
IKIGSRTYLK FIDQTGVANP DRVEWSMREL MSTDDNALVL CRIEKKIPKS TTKKRKQAIS  180
STTNSTSIVD NNVDEDLLQE NKRQCLVHLQ LQQSTDQEQQ TKEMIDNDNS DLWLKQMIDD  240
YLQKSDNLNS STTTTQVNID NPECVISIQD LQNSQTSPNN QENERNTATS SSVDEGNNII  300
SYLDLLNSDD QKLNDDYPQI NQQVVRGDDD DNLCWEDLGD LLANPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167175PKSTTKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843047.15e-64uncharacterized protein LOC110783060
TrEMBLA0A0K9QBJ40.0A0A0K9QBJ4_SPIOL; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-09NAC domain containing protein 50