PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_197900_mixi.t1

Common Name

SOVF_197900

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 494aa MW: 54499.5 Da PI: 5.8506

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_197900_mixi.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	152	212	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Sp_197900_mixi.t1 152 PDKMIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 212 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	150	209	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-32	154	210	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.817	156	210	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	158	194	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MAEAKDPAIK LFGKTIPLQE IPSDSPKDDC CFTKPAHVHD VHVQDVDVHD VVDYDDDGSC 60 IKSNNNTESM QDDTVPEERK TNKIDQDGKT FETKQVGISP EVSDKIQDAS LGFTDNLEAI 120 SGVDEKAVGE SSKPEEEKSD TSVSEEKAPK KPDKMIPCPR CNSMDTKFCY YNNYNVNQPR 180 HFCKNCQRYW TAGGTMRNVP VGAGRRKNKN SASHYRHVSI PEALHNPRSD IPNGIHHPVL 240 TTNGTVLTFS SDTPLCESMA SVLNLAEKTV RKFPPNGFQK PEELKISTSF GGLENGGNHV 300 DGSNTNEHTS KSALKEATAF PPQIPCYPGA PWPFPWNSAQ WSPPVAAPAF CPNGFAMPFY 360 PAPPYWGCNI PGTWNIPWMA QPSPLSHLNP NSPLGKHSRD NSEEKELEEN NSERSLWIPK 420 TLRIDDPGEA AKSSIWTTLG IKNGEKSDSI GRGSGLFKAF QSKHDERNPH METSAVLEAN 480 PAALSRSQNF QENS

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MAEAKDPAIK LFGKTIPLQE IPSDSPKDDC CFTKPAHVHD VHVQDVDVHD VVDYDDDGSC  60
IKSNNNTESM QDDTVPEERK TNKIDQDGKT FETKQVGISP EVSDKIQDAS LGFTDNLEAI  120
SGVDEKAVGE SSKPEEEKSD TSVSEEKAPK KPDKMIPCPR CNSMDTKFCY YNNYNVNQPR  180
HFCKNCQRYW TAGGTMRNVP VGAGRRKNKN SASHYRHVSI PEALHNPRSD IPNGIHHPVL  240
TTNGTVLTFS SDTPLCESMA SVLNLAEKTV RKFPPNGFQK PEELKISTSF GGLENGGNHV  300
DGSNTNEHTS KSALKEATAF PPQIPCYPGA PWPFPWNSAQ WSPPVAAPAF CPNGFAMPFY  360
PAPPYWGCNI PGTWNIPWMA QPSPLSHLNP NSPLGKHSRD NSEEKELEEN NSERSLWIPK  420
TLRIDDPGEA AKSSIWTTLG IKNGEKSDSI GRGSGLFKAF QSKHDERNPH METSAVLEAN  480
PAALSRSQNF QENS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021857240.1	0.0	cyclic dof factor 1
TrEMBL	A0A0K9QDN9	0.0	A0A0K9QDN9_SPIOL; Uncharacterized protein
STRING	XP_010693252.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-95	cycling DOF factor 2