PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_196780_fijm.t2
Common NameSOVF_196780
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 574aa    MW: 62942.2 Da    PI: 8.3218
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_196780_fijm.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.8e-32222279260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkk+e++  d++++ei+Y+g+Hnh+k
  Sp_196780_fijm.t2 222 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPMKKKIETAI-DGQITEIVYKGSHNHPK 279
                        7****************************************.***************85 PP
2WRKY1062e-33399457159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+a+d ++v++tYeg+Hnh+
  Sp_196780_fijm.t2 399 LDDGYRWRKYGQKVVKGNPNPRSYYKCTQPGCPVRKHVERAAHDLRAVITTYEGKHNHD 457
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-28213280IPR003657WRKY domain
SuperFamilySSF1182902.09E-24215280IPR003657WRKY domain
PROSITE profilePS5081122.378216280IPR003657WRKY domain
SMARTSM007743.9E-34221279IPR003657WRKY domain
PfamPF031061.6E-24222278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37384459IPR003657WRKY domain
SuperFamilySSF1182902.62E-29391459IPR003657WRKY domain
PROSITE profilePS5081138.01394459IPR003657WRKY domain
SMARTSM007747.4E-39399458IPR003657WRKY domain
PfamPF031061.0E-25400457IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MTNSSFTDLL NSGADDSSKL TVPNRSLSDR IADRTGSGIP KFKSLPPPSI PLSPPPVSPS  60
SYFAFPPGLS PTDLLDSPVL LSSSHVLPSP TTGAFAANWK SYSNNNSSNN NNNKQEDVNK  120
YSDFTFQTQT RPNHVSSNMF QPSFLNAVRG RENQPVQQPA QPQQQSWNFD QKNDGSSNSI  180
TAMVKSEFPG ENYNQGSVVK YETDQNPPYQ PAQYIREQRR SEDGYNWRKY GQKQVKGSEN  240
PRSYYKCTFP NCPMKKKIET AIDGQITEIV YKGSHNHPKP VNTRRSSAAA SAVSAAFQNG  300
SVPPSSSNDY HDHSLGPQRS SSGQMDSGAT PENSSISMAD DEVDMGSHRS RSSADGDEPE  360
AKRWRGEVDQ NECMSAAPGS RAVREPRVVV QTTSDIDILD DGYRWRKYGQ KVVKGNPNPR  420
SYYKCTQPGC PVRKHVERAA HDLRAVITTY EGKHNHDVPA PRGSGMSRAA MAPNNVPVSL  480
MAIKPSAVNY TSNAHSFQTS NQGGMPSSFD GAGPLSPFTL QLLQNPGSFG FSGYLNQPQY  540
SDNNMFSNTT ATTTSTIKAK EEPKEDMLFE SLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38222460878Probable WRKY transcription factor 4
2lex_A7e-38222460878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861348.10.0WRKY transcription factor WRKY24-like
SwissprotQ6IEQ71e-124WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0K9QBV40.0A0A0K9QBV4_SPIOL; Uncharacterized protein
STRINGXP_010685944.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-109WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]