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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sp_196780_fijm.t1 |
Common Name | SOVF_196780 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family |
WRKY |
Protein Properties |
Length: 576aa MW: 63199.4 Da PI: 8.1182 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sp_196780_fijm.t1 | genome | TBVR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 102.9 | 1.8e-32 | 224 | 281 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkk+e++ d++++ei+Y+g+Hnh+k
Sp_196780_fijm.t1 224 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPMKKKIETAI-DGQITEIVYKGSHNHPK 281
7****************************************.***************85 PP
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2 | WRKY | 106 | 2e-33 | 401 | 459 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+a+d ++v++tYeg+Hnh+
Sp_196780_fijm.t1 401 LDDGYRWRKYGQKVVKGNPNPRSYYKCTQPGCPVRKHVERAAHDLRAVITTYEGKHNHD 459
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 576 aa
Download sequence Send
to blast |
MTNSSFTDLL NSGADDSSKL TVPNRSLSDR IADRTGSGIP KFKSLPPPSI PLSPPPVSPS 60 SYFAFPPGLS PTDLLDSPVL LSSSHVLPSP TTGAFAANWK SYSNNNSSNN NNNKQEDVNK 120 YSDFTFQTQT RPNHVSSNMF QPSFLNEQAV RGRENQPVQQ PAQPQQQSWN FDQKNDGSSN 180 SITAMVKSEF PGENYNQGSV VKYETDQNPP YQPAQYIREQ RRSEDGYNWR KYGQKQVKGS 240 ENPRSYYKCT FPNCPMKKKI ETAIDGQITE IVYKGSHNHP KPVNTRRSSA AASAVSAAFQ 300 NGSVPPSSSN DYHDHSLGPQ RSSSGQMDSG ATPENSSISM ADDEVDMGSH RSRSSADGDE 360 PEAKRWRGEV DQNECMSAAP GSRAVREPRV VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN 420 PRSYYKCTQP GCPVRKHVER AAHDLRAVIT TYEGKHNHDV PAPRGSGMSR AAMAPNNVPV 480 SLMAIKPSAV NYTSNAHSFQ TSNQGGMPSS FDGAGPLSPF TLQLLQNPGS FGFSGYLNQP 540 QYSDNNMFSN TTATTTSTIK AKEEPKEDML FESLLC
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Zhang ZL, et al.
A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells. Plant Mol. Biol., 2009. 70(1-2): p. 139-51 [PMID:19199048] - Basu S,Roychoudhury A
Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance. Biomed Res Int, 2014. 2014: p. 706890 [PMID:25110688] - Zhang L, et al.
Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells. Plant Sci., 2015. 236: p. 214-22 [PMID:26025535]
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