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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_196050_qian.t1 | ||||||||
Common Name | SOVF_196050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28312.8 Da PI: 9.8236 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.4e-08 | 150 | 190 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Sp_196050_qian.t1 150 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 190 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 141 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-13 | 142 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.94E-11 | 143 | 195 | No hit | No description |
SuperFamily | SSF47459 | 3.79E-14 | 145 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-6 | 151 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:0080126 | Biological Process | ovary septum development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDIDLLKSTS DEQIEMMLMT MHMGKATASG NSGGGSPPYA DTSAMMSFNG VPQHFNSPTF 60 FNTPQTTISF TTNNNSNNNN SNNNSVPNLL PSYRDENGAS IPQKQTSMAA MREMIFRIAA 120 MQPIYIDPEA VKPPKRRNVR ISKDPQSVAA RHRRERISEK IRILQRLVPG GTKMDTASML 180 DEAIHYVKFL KGQVQSLERV AINNHHHRPG GGGQPQPPVS ATGIGFPVPV SGGGGGGYSY 240 HPLHMNAAPH NVQQFSDSDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021839700.1 | 0.0 | transcription factor HEC1-like | ||||
Refseq | XP_021839701.1 | 0.0 | transcription factor HEC1-like | ||||
Swissprot | Q9SND4 | 2e-47 | HEC2_ARATH; Transcription factor HEC2 | ||||
TrEMBL | A0A0K9QE73 | 0.0 | A0A0K9QE73_SPIOL; Uncharacterized protein | ||||
STRING | XP_010688854.1 | 4e-84 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 4e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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