PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_195750_urxy.t1 | ||||||||
Common Name | SOVF_195750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 367aa MW: 39840.8 Da PI: 10.2416 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100 | 1.4e-31 | 273 | 331 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp+++++tYegeH+h+ Sp_195750_urxy.t1 273 SDDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPTMLIVTYEGEHRHS 331 69************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.2E-15 | 221 | 270 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-33 | 259 | 331 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.227 | 267 | 333 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-27 | 268 | 331 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-37 | 272 | 332 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-26 | 274 | 330 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
MGGGYRSRKM EDEVAIEEAA SAGVKSMEHL LRLLSSSSSP SSSSECREVT EVTVGKFKRL 60 ISVLNRTGHA RFRRAPNLSV SSDSSNSSDS PPPFQPPPPH STKPLFTPPP AQTPTTPICQ 120 PEKPIPLRVV RQSHNHPMTL DFTKPNPNTK PCASISNSAS FSISSSANSS SFLSTITGEG 180 SVSNRKLFGG SVFVPPPTSS SGFAASGKPP LSTSSSSHHN KSCHHHHQEF SEDFSGKISG 240 STRCHCSSKR KKLRVKKTMR VPAISSKTAD IPSDDYSWRK YGQKPIKGSP YPRGYYKCST 300 VRGCPARKHV ERATDDPTML IVTYEGEHRH SPIPASHDNI SHHMVPTTAT PAWLVPLQSH 360 PILTLSD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 260 | 335 | 2 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021835811.1 | 0.0 | WRKY transcription factor WRKY51-like | ||||
Swissprot | Q9SV15 | 3e-96 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A0K9QDU5 | 0.0 | A0A0K9QDU5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010693004.1 | 1e-150 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31550.2 | 5e-84 | WRKY DNA-binding protein 11 |