PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_195030_udyz.t1
Common NameSOVF_195030
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 412aa    MW: 45350.1 Da    PI: 4.8353
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_195030_udyz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.81.4e-34242296155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr+rWtpeLHe+Fv+av++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+
  Sp_195030_udyz.t1 242 KPRMRWTPELHEAFVDAVNHLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 296
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.011239299IPR017930Myb domain
SuperFamilySSF466893.76E-18240296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-32240297IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-25242296IPR006447Myb domain, plants
PfamPF002496.8E-10244295IPR001005SANT/Myb domain
PfamPF143793.3E-22328373IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MQTSNGNCFN ELKVPGSYSS ALPILANPLE DFPKSPDPFF VSSSRDMIAS PLQMQANPGA  60
SHIGSSSSDS LFIGGFPADL QFPSFSPRES LPENEAFISQ SVGGGANFPS NHGTVSDLQS  120
TGFINYQKDD DDNSWSTGHL QDLLDLPEGV SIVNGQVGNS TEVMSSDNHV KRIGWREMDL  180
YADSIEPNWN EFLADSNTVD QQPKMPQSSS DIVVPQPQTQ QQLLPARETS ASANPTSSSQ  240
NKPRMRWTPE LHEAFVDAVN HLGGSERATP KGVLKLMNVE GLTIYHVKSH LQKYRTARVR  300
PESPERNLEN RSGSTEQVSA VDLKTSVTIT EALRMQMEVQ KQLHEQLEIQ RKLQLQIEEQ  360
GKYLLQMLEN QNKAEKEKSK SSPQDKPEAS ASEAGGSDSP PSKRSRTDDS VH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-31242300260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-31242300260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-31242300260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-31242300260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-31242300260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-31242300260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-31242300260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-31242300260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864753.10.0myb family transcription factor PHL13-like
TrEMBLA0A0K9QCD60.0A0A0K9QCD6_SPIOL; Uncharacterized protein
STRINGXP_010675144.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.28e-73G2-like family protein