PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_194430_wacm.t1

Common Name

SOVF_194430

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 307aa MW: 34001.6 Da PI: 6.4117

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_194430_wacm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Sp_194430_wacm.t1 130 FSCNYCQRKFYSSQALGGHQNAH 152 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.13E-6	127	157	No hit	No description
PROSITE profile	PS50157	11.427	130	157	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	132	152	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MVHPIPHIKE RESFYLMEQV ELEPCLSGAS STISAAHEAP PHTRLYRPLH QQYKTGKEAQ 60 LEDQYQDQDQ DQEQETVSET HIPLDLMLSN DESCHEFNAE LNLIDCLNVG SSQSSSETPQ 120 LSESCEPRVF SCNYCQRKFY SSQALGGHQN AHKRERTIAK RNQRIGATIA ATAAAFGHPY 180 LHQQHNYSNI ASLPLHGSPN RSLGIQVHSM IHKTPANNNT MTMSSSGNVY GHQGWLRLPI 240 EQQPAVGKLV TETYHHGSTT AGPSSRGGAG RFNIVEEGVT SGGWWTGESQ IKSISEDSTN 300 LDLSLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021857062.1	0.0	zinc finger protein 3-like
TrEMBL	A0A0K9QCL9	0.0	A0A0K9QCL9_SPIOL; Uncharacterized protein
STRING	XP_010665880.1	1e-168	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	8e-49	C2H2 family protein