PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_193860_qyts.t1

Common Name

SOVF_193860

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 176aa MW: 20073.1 Da PI: 6.5187

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_193860_qyts.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.8	1.1e-14	70	154	12	98
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 ++ +l+lpk+f+++ +k + + ++ ++ rsWe+ + ++ + + Wk Fv++n+Lk++D+++F+l+ + + +++v+v+r Sp_193860_qyts.t1 70 NKYQLILPKTFTQKLANK-TIP---VILTRGKRSWEMAYLGQNAAHYKKFDQRWKAFVHDNKLKVKDVCIFELMeCSdNALKFKVQVLR 154 34789*****888644.444...4455677***666666667799*******************88544467777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-15	52	156	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-16	52	158	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.99E-14	54	154	No hit	No description
SMART	SM01019	3.3E-8	56	156	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.996	59	156	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-12	70	150	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MSDGPKPLVK NEVKVEPENK FEVDPVLETK DELVLPTNSC DDDDTDIEPL SGKPFFHITL 60 LRSHVGGGTN KYQLILPKTF TQKLANKTIP VILTRGKRSW EMAYLGQNAA HYKKFDQRWK 120 AFVHDNKLKV KDVCIFELME CSDNALKFKV QVLRSDFPSI LLEKEDGTIN NPIVVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021858973.1	1e-124	uncharacterized protein LOC110798132
TrEMBL	A0A0K9QEU5	1e-127	A0A0K9QEU5_SPIOL; Uncharacterized protein
STRING	XP_010694213.1	3e-63	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	2e-07	related to vernalization1 1