PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_192560_dzus.t1
Common NameSOVF_192560
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 430aa    MW: 47033.7 Da    PI: 9.285
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_192560_dzus.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1776135155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Sp_192560_dzus.t1  76 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 135
                        57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-1376135IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-1776144IPR016177DNA-binding domain
PROSITE profilePS5103220.12677143IPR001471AP2/ERF domain
SMARTSM003803.8E-2677149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1577144IPR001471AP2/ERF domain
PRINTSPR003674.3E-57889IPR001471AP2/ERF domain
PRINTSPR003674.3E-5125145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MASTSSGDVG AGCGGGGEMG VATVKMTAGT TSVQKNKESE GVGVVMMKKV KRERGGSTAK  60
DRISKMPPST AGKRSSIYRG VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ VYLGAYDDEE  120
AAARAYDLAA LKYWGPGTLI NFPVTDYSRD LEEMQSVSRE EYLASLRRKS SGFSRGIAKY  180
RALSSGRWEP SLGRATATEY LHGIHYGKGE DMPAEGDYPG GFSIERKLDL TGYIKWWGQN  240
KVRQSEAGKH SSSSEEMGTE LKSLEREIQS TEPYQIPQLG TSYEAKKNNK GSATSSALSI  300
LSRSAAYKSM QDKASKAKET TTDNDEKENK SYISKIDCGK DIQKTCDDAG IETLGSSLGI  360
GGLPLHKNMF PLSPLLTAPL LTNYNTLDPL ADPILWTSLM PVLPTAPSRT VEVTKTETGS  420
TYSFLRQEEG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0270510.0KJ027051.1 UNVERIFIED: Atriplex canescens isolate AC622 Ac protein-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839464.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-149AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0K9QD460.0A0A0K9QD46_SPIOL; Uncharacterized protein
STRINGXP_010672391.10.0(Beta vulgaris)
STRINGXP_010672863.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-130AP2 family protein