PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_188900_doae.t1
Common NameSOVF_188900
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 589aa    MW: 64705.4 Da    PI: 6.6804
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_188900_doae.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.3e-17190239155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sp_188900_doae.t1 190 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 239
                        78*******************......55************************997 PP
2AP242.61.5e-13282332155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Sp_188900_doae.t1 282 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 332
                        89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-9190239IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-15190248IPR016177DNA-binding domain
CDDcd000181.16E-10191246No hitNo description
PROSITE profilePS5103217.912191247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-17191247IPR001471AP2/ERF domain
SMARTSM003802.5E-31191253IPR001471AP2/ERF domain
PfamPF008474.0E-9282332IPR001471AP2/ERF domain
CDDcd000182.07E-25282342No hitNo description
SuperFamilySSF541713.73E-17282342IPR016177DNA-binding domain
PROSITE profilePS5103215.672283340IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-16283340IPR001471AP2/ERF domain
SMARTSM003802.0E-32283346IPR001471AP2/ERF domain
PRINTSPR003678.1E-6284295IPR001471AP2/ERF domain
PRINTSPR003678.1E-6322342IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MWDLNGSPDE ATRAARGGGG GYADSEGGSS LKTTSLDADD KNSTSSAIVI DDGGERSDGD  60
EPSGDGKKRA NNTNPTITNR RLFGFSFLTN NNINNNDDED DDNNSSFSGE PPVTHQFFPV  120
EIDVSGGDIA GTSTGNFTTM SHWDGTRYTT TTSDTLPAAT TLMGSSGSNK PTELAQPMKK  180
SRRGPRSRSS QYRGVTYYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV  240
DADINFTLED YQDDLKQMGN LTKEEFVHIL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG  300
QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYEEELKA AGCSTSGGDG  360
VGGGGGGGEH NLDLSLGGGG GSSSTRINTG LDFRDNPTMQ DQQQFSSSMQ LELNWQNQGS  420
RPKDAYGHDH AETMQLLSQT RLQSSPTSLK PNEISSMHNR YAGQMPVFVP PHLNSSNYHH  480
HHQIQFPSSS NGGRIDLMLS NNNNINSSIN NNSNEIRQHQ QQQQQQQQQQ QLQLQQQHHQ  540
QQQQQWQAGI HPQMFATAAA SSGFSQQISR PPPNWTPPNT GFHPLMRPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861759.10.0floral homeotic protein APETALA 2-like
TrEMBLA0A0K9QEA50.0A0A0K9QEA5_SPIOL; Uncharacterized protein
STRINGXP_010667967.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.29e-94AP2 family protein