PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_188130_fecz.t1 | ||||||||
Common Name | SOVF_188130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WRKY | ||||||||
Protein Properties | Length: 457aa MW: 49388.4 Da PI: 6.4428 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.3 | 3.2e-33 | 241 | 299 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt+a C vkk+vers++d ++v +tYeg+H+h+ Sp_188130_fecz.t1 241 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTAACGVKKRVERSSDDSTIVMTTYEGQHTHP 299 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-34 | 226 | 301 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-29 | 233 | 301 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.686 | 236 | 301 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-39 | 241 | 300 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 242 | 299 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MSASKMIDQI NNTNNNSYSN LSIFSDQMMF GYNNNNNMFD VAASSAPFDM MMSGSSGGVG 60 GGGGGCDKTN NNNNNYYLGF MDMLGYQDYL GGGSSSGPGS LFDLLPHTMT TTATTATTNS 120 APLTETTTSS QVLVQQHQQQ SVQSLVLVDP STSSCSTIVV PGESSEVVNT PATPNSLSIS 180 SSSSDEIPQQ QSKTAEANDD EDDHHAEDDK FKKQLKPKKK NQKRPKEPRF AFMTKSEVDH 240 LDDGYRWRKY GQKAVKNSPF PRSYYRCTTA ACGVKKRVER SSDDSTIVMT TYEGQHTHPC 300 PVMTRGGLGI GIGMGMGMGM IPMPNHLNQC STAPTTPSAF GGSGAASSTL LFPHPQHYLH 360 SNNIYTHHQQ LQQQQQQQQQ LQQLPSYFLN PSPTSLSFSS PSGGGGGGGG QQPNPISIQR 420 EMRPPGSSSS NQVRDDGLLQ DIVPSQMRND QPTTKEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 234 | 301 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 234 | 301 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021859202.1 | 0.0 | probable WRKY transcription factor 23 | ||||
TrEMBL | A0A0K9QEI8 | 0.0 | A0A0K9QEI8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010671761.1 | 1e-131 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 7e-42 | WRKY DNA-binding protein 48 |