PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_188130_fecz.t1
Common NameSOVF_188130
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 457aa    MW: 49388.4 Da    PI: 6.4428
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_188130_fecz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-33241299159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+s+fprsYYrCt+a C vkk+vers++d ++v +tYeg+H+h+
  Sp_188130_fecz.t1 241 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTAACGVKKRVERSSDDSTIVMTTYEGQHTHP 299
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-34226301IPR003657WRKY domain
SuperFamilySSF1182908.24E-29233301IPR003657WRKY domain
PROSITE profilePS5081131.686236301IPR003657WRKY domain
SMARTSM007743.7E-39241300IPR003657WRKY domain
PfamPF031061.3E-26242299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSASKMIDQI NNTNNNSYSN LSIFSDQMMF GYNNNNNMFD VAASSAPFDM MMSGSSGGVG  60
GGGGGCDKTN NNNNNYYLGF MDMLGYQDYL GGGSSSGPGS LFDLLPHTMT TTATTATTNS  120
APLTETTTSS QVLVQQHQQQ SVQSLVLVDP STSSCSTIVV PGESSEVVNT PATPNSLSIS  180
SSSSDEIPQQ QSKTAEANDD EDDHHAEDDK FKKQLKPKKK NQKRPKEPRF AFMTKSEVDH  240
LDDGYRWRKY GQKAVKNSPF PRSYYRCTTA ACGVKKRVER SSDDSTIVMT TYEGQHTHPC  300
PVMTRGGLGI GIGMGMGMGM IPMPNHLNQC STAPTTPSAF GGSGAASSTL LFPHPQHYLH  360
SNNIYTHHQQ LQQQQQQQQQ LQQLPSYFLN PSPTSLSFSS PSGGGGGGGG QQPNPISIQR  420
EMRPPGSSSS NQVRDDGLLQ DIVPSQMRND QPTTKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-252343011077Probable WRKY transcription factor 4
2lex_A3e-252343011077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859202.10.0probable WRKY transcription factor 23
TrEMBLA0A0K9QEI80.0A0A0K9QEI8_SPIOL; Uncharacterized protein
STRINGXP_010671761.11e-131(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.17e-42WRKY DNA-binding protein 48