PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_187730_xizi.t1
Common NameSOVF_187730
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 743aa    MW: 82878.9 Da    PI: 6.0815
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_187730_xizi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.5e-07118140427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C ff++ G+C   drC+F+Hgp
  Sp_187730_xizi.t1 118 VPCIFFQK-GYCLKADRCPFMHGP 140
                        79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8682857IPR000571Zinc finger, CCCH-type
SMARTSM003560.00252956IPR000571Zinc finger, CCCH-type
PfamPF156635.2E-122983No hitNo description
PROSITE profilePS5010311.2355985IPR000571Zinc finger, CCCH-type
SMARTSM003560.0425984IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014114141IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5115140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5116139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4117140IPR000571Zinc finger, CCCH-type
PfamPF146080.27119139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MATTVTKEAL QPQLGPLSSS SAAEDESMKR NTDCVYYLAS PLTCKKGSEC EYRHSEYARM  60
NPTDCFYWMN GNCLNPKCSF RHPPLDGLVG SQVDGPSAFV PPGPSVLSAP QNPTKQGVPC  120
IFFQKGYCLK ADRCPFMHGP NLPTTKIQQV PASTATPGAP AFKKAFGSLE KCTQPKTNFQ  180
TNKPNVVEML PQGNAMPKIQ SVRPMNGSTV RKGYLPPSGM TEGALKYGEM KLPSADSGIS  240
RSRTGRAHGV SYDDQNFQNG RDADDSLRES SPGFDVLVDD NKDEFYHNED QYVKMRGHDG  300
RNLNEFDMGR QDDYNSVADV DPEIYHNRRA YDSFDRLPEK YPRDHRRRSS ERSLGEPGHM  360
DRRGPYKSES IDLNQNSDLR HRLSKHRRVN GLKSVVNSNY SLDDHSEDRG YRSTRRDSRR  420
SPTRESSRGN RLQGRIKLPR RSSPVSGSDI YSERERESER GRKWGRSSPS RQQVPSQQGR  480
LRDRLSGLIQ DESREERIIK GPVMRKDIVL SNGINFAGPK SLSQLKGTKH TDRRQEQLKS  540
QQTVSGGKLR DTVLASSIGT EGDISFAGPR PLSEILKRKR TSSTGGTTSS DDKEEIKHNE  600
NDVNLTSSAS NSAADTGKQV AFNSADEQAK VVVKNKLLAV EADEEEGEIS NKNSKLNGES  660
ESSSPKNNNK HPEAEEVFVV ADEADGEEHE FDEEYDHGDG EYEYEQDDGE GYQLNDGETG  720
DHEEEFMDED DGDDLAKKLG VSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852573.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A0K9QEN30.0A0A0K9QEN3_SPIOL; Uncharacterized protein
STRINGXP_010680041.10.0(Beta vulgaris)