PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_187250_ceyk.t1
Common NameSOVF_187250
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 331aa    MW: 37401.9 Da    PI: 8.0793
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_187250_ceyk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
  Sp_187250_ceyk.t1 14 KGPWSPEEDVKLKDYIHKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding37.45.7e-1269111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++ +Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Sp_187250_ceyk.t1  69 GDFSDDEDRIICSLYATIGTR-WSIIAAQLP-GRTDNDIKNYWNT 111
                        679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.627962IPR017930Myb domain
SuperFamilySSF466891.14E-2611109IPR009057Homeodomain-like
SMARTSM007175.6E-121364IPR001005SANT/Myb domain
PfamPF002492.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231569IPR009057Homeodomain-like
CDDcd001672.05E-81662No hitNo description
PROSITE profilePS5129422.35763117IPR017930Myb domain
SMARTSM007171.2E-1167115IPR001005SANT/Myb domain
PfamPF002499.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2370117IPR009057Homeodomain-like
CDDcd001671.07E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDVKLKDYIH KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDRIIC SLYATIGTRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGN  120
IITNNNNSPN LNISNHKKSL NYYPMLQNNL YPSSPSSSLL SSPSFQCTST YPITMSFSEG  180
CSNNNSNTLI LMQNHQQQVK DNSTLLEFGG DHQQQPSSCS SDGSGSITQM ITNQVKIEDN  240
QQNNYGCFYA NQVVNHQQDG QGKMVLVEEK SSCVRGDSAV LWGQNGQTTT STSLLENYGL  300
EEIKQLITTN YSFHETKEEE KDMTKVMYYY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7499201e-116KP749920.1 Salicornia brachiata R2R3 type MYB15 (MYB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847206.10.0transcription factor RAX2
TrEMBLA0A0K9QGU30.0A0A0K9QGU3_SPIOL; Uncharacterized protein
STRINGXP_010684035.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-80myb domain protein 36