PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_187060_gsgq.t1
Common NameSOVF_187060
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 502aa    MW: 54988.6 Da    PI: 6.6195
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_187060_gsgq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl
  Sp_187060_gsgq.t1 14 KGPWTPEEDQKLLAYIEEHGHGNWRALPTKAGLQRCGKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding52.41.2e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Sp_187060_gsgq.t1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.735961IPR017930Myb domain
SuperFamilySSF466891.06E-3011108IPR009057Homeodomain-like
SMARTSM007177.9E-151363IPR001005SANT/Myb domain
PfamPF002491.4E-161461IPR001005SANT/Myb domain
CDDcd001674.74E-121661No hitNo description
PROSITE profilePS5129425.89162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-2665116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002496.6E-1667112IPR001005SANT/Myb domain
CDDcd001671.60E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGRSPCCDKL GLKKGPWTPE EDQKLLAYIE EHGHGNWRAL PTKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLPAADGD GKVTKNAANL SHIAQWESAR LEAEARLARQ SKVRGNSNSN  180
NVNINSSTFA SSAISPDVHI NDHHHQIVPP LGLLSSSSSS SSSVAAAHHH HHQYLSVTTN  240
ASVSVSVSVS AATTTTNTLK AWHSVWPNAT TSTYDNEPII CFGMGSNGIG GGGVGVGIES  300
PTSTLSFLEN APPVIPGAVI EFMGHHNDHQ QEQMVKKEGD HHNHQQLQQH KWKRGGAFDN  360
GIEIEIQMNS LPFSPASAEF HDMNAISIHQ SKETHGGNEK DDDDQDDLDE DPDPDHGQGF  420
IEGFTELLLS TNTTTDTTIK TTSCGEKSRA KDGHVDEDNN DNSSAGTTSR SGGSDYYEDN  480
KTYWNSILNL VNSSPPPHSP MF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856193.10.0transcription factor MYB106-like
TrEMBLA0A0K9QEU90.0A0A0K9QEU9_SPIOL; Uncharacterized protein
STRINGXP_010670239.11e-180(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-96myb domain protein 16