PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_186950_uzmo.t1
Common NameSOVF_186950
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 352aa    MW: 39593.1 Da    PI: 8.8752
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_186950_uzmo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.5e-52151431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+v+yLk+k+++ +l++ ++i+evd+yk++Pw+Lp+k+  +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
  Sp_186950_uzmo.t1  15 LPPGFRFHPTDEELIVHYLKRKASSVPLPV-SIIAEVDLYKFDPWELPSKAIFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPI 105
                        79****************************.89***************7777799************************************* PP

                NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        l++  ++++vg+kk Lvfy g+ p+g ktdW+mheyr+
  Sp_186950_uzmo.t1 106 LTSngSNQKVGVKKALVFYGGKPPRGIKTDWIMHEYRV 143
                        *99777788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-637179IPR003441NAC domain
PROSITE profilePS5100561.00715179IPR003441NAC domain
PfamPF023652.2E-2716143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MESTDSSSTQ PYPQLPPGFR FHPTDEELIV HYLKRKASSV PLPVSIIAEV DLYKFDPWEL  60
PSKAIFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG SNQKVGVKKA  120
LVFYGGKPPR GIKTDWIMHE YRVIDANSTS KLPHSLVDHP SKKPSLRLDD WVLCRIYKKN  180
NTQRPIEHDR DDLIEEMIKQ QKLMRTICSK NTNLMDHNNN NEQNLYEFSQ LGTSTSRHEM  240
YGIQGNDNNK REQQQQLQQQ QGSLYYDDPM GSVGSSSGRR FHHQQSDQTT GSTTGTDGNS  300
SSFVSMLSNL PQGITSTSSG VPFSMGSPLL VGNIGDGVLR PPFQLSGGTW NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-741518115170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850756.10.0NAC transcription factor 25-like
SwissprotQ8GY421e-106NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0K9QEW30.0A0A0K9QEW3_SPIOL; Uncharacterized protein
STRINGXP_010686575.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-104NAC domain containing protein 25