PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_184590_qemt.t2

Common Name

SOVF_184590

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NAC

Protein Properties

Length: 385aa MW: 43410.9 Da PI: 8.1245

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_184590_qemt.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.8	3.6e-52	14	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPtdeelv +yLk+k+ +++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++ Sp_184590_qemt.t2 14 LPGFRFHPTDEELVGFYLKRKILQQSLPI-ELIKQVDIYKYDPWDLPKLASNGEKEWYFYCPRDRKYRNSSRPNRVTCAGFWKATGTDRPIY 104 69*************************.89***********88888999*********************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ + + +glkk+Lvfy+gra kg ktdW+mhe+rl Sp_184590_qemt.t2 105 SSdSAKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 140 955566**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	56.56	13	171	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-57	13	171	IPR003441	NAC domain
Pfam	PF02365	2.1E-25	15	140	IPR003441	NAC domain

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MEKNEVDKVD DVILPGFRFH PTDEELVGFY LKRKILQQSL PIELIKQVDI YKYDPWDLPK 60 LASNGEKEWY FYCPRDRKYR NSSRPNRVTC AGFWKATGTD RPIYSSDSAK CIGLKKSLVF 120 YRGRAAKGMK TDWMMHEFRL PSLSDAAPTK KLFDRSFPAN DSWAICRIFK KTNTMAQRAL 180 SHSWVSALPE TTAACDMFNQ APNFIGSQFS PDNISCTTEA ANSSIQVCNN NDLQNTTSPV 240 SFSTLDQYKP ITNPTVSKVS TIPTSFTDLQ NNLIFPTSEV SAMLLNLTPA FTSDVVKITD 300 TIDFGGSQSQ QLYNGFPMSL SQNIIEADEH LGFRKSQNQQ WNNIRSLGFP FSFPSSVSNS 360 ATLSWDSAPC PSELSTSYSS NKCYR

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MEKNEVDKVD DVILPGFRFH PTDEELVGFY LKRKILQQSL PIELIKQVDI YKYDPWDLPK  60
LASNGEKEWY FYCPRDRKYR NSSRPNRVTC AGFWKATGTD RPIYSSDSAK CIGLKKSLVF  120
YRGRAAKGMK TDWMMHEFRL PSLSDAAPTK KLFDRSFPAN DSWAICRIFK KTNTMAQRAL  180
SHSWVSALPE TTAACDMFNQ APNFIGSQFS PDNISCTTEA ANSSIQVCNN NDLQNTTSPV  240
SFSTLDQYKP ITNPTVSKVS TIPTSFTDLQ NNLIFPTSEV SAMLLNLTPA FTSDVVKITD  300
TIDFGGSQSQ QLYNGFPMSL SQNIIEADEH LGFRKSQNQQ WNNIRSLGFP FSFPSSVSNS  360
ATLSWDSAPC PSELSTSYSS NKCYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-53	15	173	17	170	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021861943.1	0.0	protein FEZ-like
TrEMBL	A0A0K9QFN0	0.0	A0A0K9QFN0_SPIOL; Uncharacterized protein
STRING	XP_010693234.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	1e-105	NAC domain containing protein 94