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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_184400_kmji.t1 | ||||||||
Common Name | SOVF_184400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27031.2 Da PI: 5.0708 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.7e-09 | 123 | 169 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + + f L ++P + kK +K ++L +A++++++Lq Sp_184400_kmji.t1 123 DHIMAERKRRELLSQLFISLSAIVPGL-----KKIDKTTVLGEAIKHMRQLQ 169 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.03E-13 | 110 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.256 | 119 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-12 | 123 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-7 | 123 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.64E-9 | 124 | 173 | No hit | No description |
SMART | SM00353 | 9.6E-10 | 125 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
METMEAWIAE LEIDVDPIFS NPYHQSDTMD EQLLAVTSDT ASPQEDFDCD LIEQFILSPP 60 HHHLSDFNDD DNNNDDDNDG VSFNVQESPP LMKQKKETKK KKKKEAVSSG STKKRRHPRQ 120 VQDHIMAERK RRELLSQLFI SLSAIVPGLK KIDKTTVLGE AIKHMRQLQE KVKVLEEIAA 180 KRIVESVVID YSASGGSNGG GGSGDSGDSG DGGYSDRSPP AIEVKTTSNT VLLRICCDKH 240 NGLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 131 | KRRHPRQVQDHIMAERKRR |
2 | 127 | 132 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021839235.1 | 1e-118 | transcription factor bHLH25-like | ||||
TrEMBL | A0A0K9QFN5 | 1e-180 | A0A0K9QFN5_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010666979.1 | 2e-54 | (Beta vulgaris) | ||||
STRING | XP_010683065.1 | 2e-54 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 8e-25 | bHLH family protein |