PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_183770_oiew.t1 | ||||||||
Common Name | S1FA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 70aa MW: 7700.39 Da PI: 10.9143 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 146.6 | 4.4e-46 | 2 | 70 | 2 | 70 |
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 av++veakGlnPGlivllv+gglll+flvgn+ily+yaqknlPP+kkkP+skkk+kre+lkqGva+PGe Sp_183770_oiew.t1 2 AVNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLKQGVAPPGE 70 789*****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 3.0E-6 | 1 | 70 | No hit | No description |
Pfam | PF04689 | 7.0E-40 | 6 | 70 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MAVNEVEAKG LNPGLIVLLV IGGLLLTFLV GNFILYTYAQ KNLPPKKKKP ISKKKMKRER 60 LKQGVAPPGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X79543 | 1e-115 | X79543.1 S.oleracea s1fa mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021839302.1 | 7e-42 | DNA-binding protein S1FA | ||||
Swissprot | P42552 | 6e-43 | S1FA_SPIOL; DNA-binding protein S1FA | ||||
TrEMBL | A0A0K9QHJ6 | 2e-40 | A0A0K9QHJ6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010104121.1 | 3e-23 | (Morus notabilis) |
Publications ? help Back to Top | |||
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