PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_183690_rqsc.t1
Common NameSOVF_183690
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 663aa    MW: 72276.5 Da    PI: 8.2163
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_183690_rqsc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000298118323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C++C+k F r  nL+ H r H
  Sp_183690_rqsc.t1  98 CEICNKGFQRDQNLQLHRRGH 118
                        *******************88 PP
2zf-C2H212.10.00059172194123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k++  +s+ k H +++
  Sp_183690_rqsc.t1 172 WKCEKCSKRYAVQSDWKAHSKVC 194
                        58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.15E-695118No hitNo description
Gene3DG3DSA:3.30.160.603.2E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.82496118IPR007087Zinc finger, C2H2
SMARTSM003550.1196118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM00355250137167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4160192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.15E-6167192No hitNo description
SMARTSM00355130172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MLKQQQQQQQ VFIEENMSNL TSAASGDASV SSGNNNNNTR GEPSSSFYFP HHQSSEEQPP  60
PQQTPAKRKR NLPGNPDPDA EVIAMSPKSL MATNRFLCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRTNK EVRKKVYVCP ETSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKR  180
YAVQSDWKAH SKVCGTREYR CDCGTLFSRR DSFITHRAFC DALAEETARS ITTNSILSNP  240
IAAAGPSNSH FINLQQQHQM QLLNNQQQQD QLHAFPLKRE QHMMNLPPWL ACPPMDPPHQ  300
HQHQHHQQLP SPSSSSSIFH QQQEQMMMQH HQQQQQNPNP SNPSMGPTFS TSSSGGGGGG  360
GGTGGLGGPY HTQAATAASA HMSATALLQK AAQMGATMSN TATPQPHQQH HHLHPQHHQQ  420
SHVSDTSNSN TTTTAGLFGL NLSSRDHQQQ EIMPTTTTTT GLIVNHGLSS FGIMNKAATP  480
SPRPTPITTN AAAATIGGPG SGNGSGSGSD HQLTASNTSP NHGPPPQPPS SFFHDMMVNS  540
LSSSYDHNDD AFGEIGGMGT MLGTSNSKKA DDDRSSLAAF HHSLGTQEDA NNNNINNNNN  600
NNNNGGGGGN DGLTRDFLGL RPLSHNDILT IAGLGNCMAT NTPSHHLHHH QQQQQDSHKS  660
WQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34168235372Zinc finger protein JACKDAW
5b3h_F5e-34168235372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122134KLKQRTNKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846046.10.0protein indeterminate-domain 11
TrEMBLA0A0K9QFX10.0A0A0K9QFX1_SPIOL; Uncharacterized protein
STRINGXP_010685384.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-112indeterminate(ID)-domain 2