PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_182130_aquq.t1
Common NameSOVF_182130
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 325aa    MW: 37013.4 Da    PI: 5.3744
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_182130_aquq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.8e-151663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++ Ed +l+  ++ +G ++W++ ++  g+ R++k+c++rw +yl
  Sp_182130_aquq.t1 16 RGPWSQAEDFKLISFIQNHGHNNWRALPKLAGLARCGKSCRLRWVNYL 63
                       89********************************************97 PP
2Myb_DNA-binding48.52e-1569114148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg + + E+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Sp_182130_aquq.t1  69 RGDFNPHEEEAIIKLHQVLGNK-WSKIASHFP-GRTDNEIKNVWNTHL 114
                        7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-22765IPR009057Homeodomain-like
PROSITE profilePS5129413.281163IPR017930Myb domain
SuperFamilySSF466897.35E-2913110IPR009057Homeodomain-like
SMARTSM007174.8E-111565IPR001005SANT/Myb domain
PfamPF002491.6E-131663IPR001005SANT/Myb domain
CDDcd001672.57E-81863No hitNo description
PROSITE profilePS5129423.83264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-2666118IPR009057Homeodomain-like
SMARTSM007173.9E-1468116IPR001005SANT/Myb domain
PfamPF002492.5E-1369114IPR001005SANT/Myb domain
CDDcd001674.09E-972114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGKGRKPCCD KAGVKRGPWS QAEDFKLISF IQNHGHNNWR ALPKLAGLAR CGKSCRLRWV  60
NYLRPDLKRG DFNPHEEEAI IKLHQVLGNK WSKIASHFPG RTDNEIKNVW NTHLKKRLKD  120
KGSNNDSQVS LSSSSSSSSC NNNTSSTPNE VLDGSNKVQQ VLIAHQTIII NNNNNNNNNN  180
NDDNDNNVEY SSSSSTSYNS QTSFSNHQIT INNDMNPSMV ENVGDHKDET MENYTENILD  240
ELIEIPYEPN LDLWELLQGE NEVQFKDVDT PISENDNKNE NVKQGGESWW WLVYLENELG  300
LDHQNHQSTN NDFFSDINFH LSSPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24161187108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845032.10.0transcription factor MYB13-like
TrEMBLA0A0K9QIB30.0A0A0K9QIB3_SPIOL; Uncharacterized protein
STRINGXP_010684846.11e-127(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.13e-67myb domain protein 72