PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_180300_cyek.t1 | ||||||||
Common Name | SOVF_180300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WRKY | ||||||||
Protein Properties | Length: 499aa MW: 54791.8 Da PI: 8.6863 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.7 | 1.1e-33 | 220 | 276 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYYrCt+++Cpvkkkvers d++++ei+Y+g+Hnhe Sp_180300_cyek.t1 220 DDGYNWRKYGQKQVKGSEYPRSYYRCTTPNCPVKKKVERSF-DGHITEIIYKGQHNHE 276 8****************************************.***************8 PP | |||||||
2 | WRKY | 103.9 | 9e-33 | 384 | 442 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+++d ++v++tYeg+Hnh+ Sp_180300_cyek.t1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCKVRKHVERASTDHSAVITTYEGKHNHD 442 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.455 | 214 | 278 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.4E-30 | 216 | 278 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-26 | 217 | 278 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-37 | 219 | 277 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-25 | 220 | 276 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.6E-36 | 370 | 444 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-29 | 376 | 444 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.355 | 379 | 444 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.9E-38 | 384 | 443 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-25 | 385 | 442 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MSDFKDIHKL FGQQQQQRSI IAIPAKSGTE SSSTYTGALG GSSNSMSNLF TDPFPESEFR 60 SFSDLLAGAI ATHLPATGEL NWSNNNKGEN NVNGGNVVGG GCSRFKANRP GSLLLPPVTP 120 AFNISPGFSP SAFLSSPTFL SPLGMSPHQT LAHITAQAAL SQAHLSIQQA DINQHSSLAA 180 YQPSLFNTCT AARQPVVSEH PSHDRRPQTN FPVAVDKPAD DGYNWRKYGQ KQVKGSEYPR 240 SYYRCTTPNC PVKKKVERSF DGHITEIIYK GQHNHERPLT GRRGKDSSLL QQLSGNTSDA 300 QFGNSLWPRD YDSAQLPTSM QLNGPSDSEE SGENSELIDD EDCNQEPKAK RRNGGVGQCD 360 GGFTRTTMTE PKIVVQTRSD VDLLDDGYRW RKYGQKVVKG NPNPRSYYKC TTVGCKVRKH 420 VERASTDHSA VITTYEGKHN HDIPAIRGST SSITAANQLE ATQIKLHNNN HLIAQVNFGA 480 NNIQRPITLR LKEEQHVIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-37 | 220 | 445 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-37 | 220 | 445 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021835502.1 | 0.0 | probable WRKY transcription factor 3 | ||||
TrEMBL | A0A0K9QGS9 | 0.0 | A0A0K9QGS9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010670218.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-113 | WRKY DNA-binding protein 3 |