PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_179220_ofso.t1
Common NameSOVF_179220
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family SRS
Protein Properties Length: 329aa    MW: 35390.7 Da    PI: 7.3904
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_179220_ofso.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702206.76.3e-64872573154
             DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel............ks 80 
                         g++sCqdCGnqakkdC+++RCRtCCksrg+dC+thvkstW+pa+ rrer+++l +      ++   +e+++++++++            ++
  Sp_179220_ofso.t1  87 GGNISCQDCGNQAKKDCVYMRCRTCCKSRGYDCTTHVKSTWIPATIRRERHHKLVQHPDPPPQQPpqQEEQQHQHQQQqylgvtpkrsrrEN 178
                        5789**********************************************888776655555544332222222222235677666555422 PP

             DUF702  81 kkqsalsstk.....lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         ++s+l +t+     +++++++  +e+ ++P+evss+avfrcvrvs+vdd e+e+aYqtav+igGhvfkGiLydqG+++
  Sp_179220_ofso.t1 179 CSTSSLVCTQlpfsgTTNTNNTVGMEVGNFPAEVSSSAVFRCVRVSGVDDTEDEYAYQTAVNIGGHVFKGILYDQGPDQ 257
                        33334444441111144555566666677************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.6E-6289256IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.0E-2791131IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-28208255IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSGFFSLGTG TENGREINDN NNITYRNEQI IPSSELWQQL PYESARSVDA NNNSNNNNRY  60
NLMMMRMSSS SGGGGGGGSG SGSGSGGGNI SCQDCGNQAK KDCVYMRCRT CCKSRGYDCT  120
THVKSTWIPA TIRRERHHKL VQHPDPPPQQ PPQQEEQQHQ HQQQQYLGVT PKRSRRENCS  180
TSSLVCTQLP FSGTTNTNNT VGMEVGNFPA EVSSSAVFRC VRVSGVDDTE DEYAYQTAVN  240
IGGHVFKGIL YDQGPDQPRQ GSNPTPTPPN YGGGGGGGGG ESSSAARGTT TTTSVGGPTI  300
GYNLDPSFYP LPLNTYLPPG TPFYPNPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849535.10.0protein SHORT INTERNODES-like isoform X1
TrEMBLA0A0K9QJA80.0A0A0K9QJA8_SPIOL; Uncharacterized protein
STRINGXP_010679824.18e-84(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-58Lateral root primordium (LRP) protein-related