PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_178640_jomh.t1

Common Name

SOVF_178640

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

CPP

Protein Properties

Length: 852aa MW: 92753.8 Da PI: 7.6489

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_178640_jomh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.3	9.6e-16	454	493	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnC+k+kClk+YC+Cfaag +C+e+C C +C+N+ e Sp_178640_jomh.t1 454 TTKRCNCRKTKCLKLYCDCFAAGFYCGESCACVGCFNRPE 493 5799*********************************876 PP
2	TCR	50.1	5.3e-16	541	578	1	38
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 ++k+gCnCkks ClkkYCeC++a++ Cse C+Ce+CkN Sp_178640_jomh.t1 541 RHKRGCNCKKSMCLKKYCECYQANVGCSEGCRCEGCKN 578 589**********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	8.4E-16	453	494	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.914	454	581	IPR005172	CRC domain
Pfam	PF03638	4.5E-12	456	491	IPR005172	CRC domain
SMART	SM01114	1.4E-16	541	582	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.1E-11	543	578	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence Send to blast
MDTPESKSTP ANTRKIKLIN PSSSDSPAFQ DSPVFNYISN LSPIQPVKAG PVAQGFPGLA 60 SPPLVFTSPR INSLTNFFNR KLQSSGPNLE ISQDHDSCQK EESDQGDSVK LVRSDQKTCN 120 AEKLPLVPTY SSSGCDDFLA DPGQCANSSQ IIQSGDAPPS LDGGCLMKLD IGNARAVGLN 180 SSTLQKSKRG AQAKSRISVR LVKNEPRHLI SSSECSGALP RLLTDHASEK CQPGDSFSEA 240 SNFERGTLRR CLFDESQRNY SADESGFWDP IANAQIQESV NMPTGKTGSR QMNNLSKPAV 300 GSCVSSITGN NPVVIPKPLG IGLHLNSVVY PRSTDSAIGS QQPSVLRVEG KKLFFLTNNQ 360 SDGKVDASNV IEKVLVSSEE LDQHQVCLVP SSDNTIASDA IEQFNNAIET KLDASSTITN 420 EITLSSDLAE NNESSLGSPK KKRKKISSST DDDTTKRCNC RKTKCLKLYC DCFAAGFYCG 480 ESCACVGCFN RPEYEDTVLE TRQQIESRNP LAFAPKVMQT VTASPTISKA VGNLSTPSSA 540 RHKRGCNCKK SMCLKKYCEC YQANVGCSEG CRCEGCKNIY GIREDYNFAR EIMLKRASVE 600 TSEGAISVNN NFVSSRVHSP PNLTPTTPAL QCSDQKKNAL ESRLPFRKFL QSPDSSHDML 660 TSEENLASPR NSQNHNEILE KNKCMDVDVH DAEIGPENIE DRLVPPGDES LYAHCSSQSS 720 NTDAKNSKLR NISQLESFAE SGPVPPSSSL RWRSSPITPI TQLTGSELKD FGTGSKHSDM 780 FEDDTPEILK HSSTPIKSVK VTSPNKKRIS PPHNHMNPSE SLKSSRKFVL RAVPSFPPLT 840 PYSKNSSVVN RE

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence Send to blast

MDTPESKSTP ANTRKIKLIN PSSSDSPAFQ DSPVFNYISN LSPIQPVKAG PVAQGFPGLA  60
SPPLVFTSPR INSLTNFFNR KLQSSGPNLE ISQDHDSCQK EESDQGDSVK LVRSDQKTCN  120
AEKLPLVPTY SSSGCDDFLA DPGQCANSSQ IIQSGDAPPS LDGGCLMKLD IGNARAVGLN  180
SSTLQKSKRG AQAKSRISVR LVKNEPRHLI SSSECSGALP RLLTDHASEK CQPGDSFSEA  240
SNFERGTLRR CLFDESQRNY SADESGFWDP IANAQIQESV NMPTGKTGSR QMNNLSKPAV  300
GSCVSSITGN NPVVIPKPLG IGLHLNSVVY PRSTDSAIGS QQPSVLRVEG KKLFFLTNNQ  360
SDGKVDASNV IEKVLVSSEE LDQHQVCLVP SSDNTIASDA IEQFNNAIET KLDASSTITN  420
EITLSSDLAE NNESSLGSPK KKRKKISSST DDDTTKRCNC RKTKCLKLYC DCFAAGFYCG  480
ESCACVGCFN RPEYEDTVLE TRQQIESRNP LAFAPKVMQT VTASPTISKA VGNLSTPSSA  540
RHKRGCNCKK SMCLKKYCEC YQANVGCSEG CRCEGCKNIY GIREDYNFAR EIMLKRASVE  600
TSEGAISVNN NFVSSRVHSP PNLTPTTPAL QCSDQKKNAL ESRLPFRKFL QSPDSSHDML  660
TSEENLASPR NSQNHNEILE KNKCMDVDVH DAEIGPENIE DRLVPPGDES LYAHCSSQSS  720
NTDAKNSKLR NISQLESFAE SGPVPPSSSL RWRSSPITPI TQLTGSELKD FGTGSKHSDM  780
FEDDTPEILK HSSTPIKSVK VTSPNKKRIS PPHNHMNPSE SLKSSRKFVL RAVPSFPPLT  840
PYSKNSSVVN RE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-17	458	579	14	121	Protein lin-54 homolog
5fd3_B	3e-17	458	579	14	121	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	440	444	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021854759.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0K9QHI4	0.0	A0A0K9QHI4_SPIOL; Uncharacterized protein
STRING	XP_010670664.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	2e-54	Tesmin/TSO1-like CXC domain-containing protein