PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_178170_ufup.t1
Common NameSOVF_178170
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 383aa    MW: 42075.4 Da    PI: 10.0236
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_178170_ufup.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30309366359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+H h+
  Sp_178170_ufup.t1 309 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAAMLIVTYEGDHSHP 366
                        99************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-16262305IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-32295367IPR003657WRKY domain
PROSITE profilePS5081129.953302368IPR003657WRKY domain
SuperFamilySSF1182907.19E-26304367IPR003657WRKY domain
SMARTSM007741.1E-36307367IPR003657WRKY domain
PfamPF031066.0E-26309366IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAVELMMGAY KSSSDSFAAR MEENAVREAT AAGLQSVEKL IKLLSQSQHQ HHNHLQNQQH  60
PTSEDSLAAT SNQDDDSDYK MVADLAVNKF KKVISLLDRT RTGHAHFRRG PLHHPQQLQQ  120
PQPKPIQVQP PQPQPSQQLL PQPKQQQQPQ LVLESKPSHG SAFTRVYSSS SQIQRLPPLP  180
HNNHPVQYSA PLGLPKPIDR KDSSTTINFS SSPAISATNS YISSLTGDTD SVQPSISSGF  240
QITNLSQVSS AGKPPLSSSS FKRKCNSMED SKCGGSSGRC HCPKRRKSRM KRVVRVPAIS  300
VKMADIPPDD YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERALD DAAMLIVTYE  360
GDHSHPQSVT DATVAAALVL ESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20295365271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851375.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-103WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0K9QJ790.0A0A0K9QJ79_SPIOL; Uncharacterized protein
STRINGXP_010688592.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-79WRKY DNA-binding protein 7