PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_177870_fmxe.t2 | ||||||||
Common Name | SOVF_177870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | AP2 | ||||||||
Protein Properties | Length: 348aa MW: 39792.9 Da PI: 5.6716 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.7 | 3.9e-15 | 45 | 104 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++n k+ ++++lg ++ + Aa+a++ a++k++g Sp_177870_fmxe.t2 45 SKYRGVTRHRWTGRYEAHLWDkECWNDtqkKKgRQVYLGAYDDEATAARAYDMAALKYWG 104 89********************99966776447**********99*************98 PP | |||||||
2 | AP2 | 49.3 | 1.2e-15 | 147 | 198 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg+f t eeAa a++ a+ +++g Sp_177870_fmxe.t2 147 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAATAYDMAAIQYRG 198 89****99**********988422...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.82E-19 | 45 | 111 | No hit | No description |
Pfam | PF00847 | 3.0E-11 | 45 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-15 | 45 | 114 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.216 | 46 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-15 | 46 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-24 | 46 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.03E-24 | 147 | 208 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-18 | 147 | 208 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-11 | 147 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-18 | 148 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.215 | 148 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-25 | 148 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 188 | 208 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:1904278 | Biological Process | positive regulation of wax biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MAKAPIKRKQ KSNSDDNVKI STTSTKSNKR TRKCLPRETP FQRSSKYRGV TRHRWTGRYE 60 AHLWDKECWN DTQKKKGRQV YLGAYDDEAT AARAYDMAAL KYWGKETILN FSLSNYENEM 120 KEMDGLSREE YLGSLRRKSN GFSRGVSKYR GVARHHHNGR WEARIGRVLG NKYLYLGTFA 180 TQEEAATAYD MAAIQYRGLN AVTNFDLSHY INNMEKPNNS CDDHQPISPN DVDLSTSTCS 240 SNQGLLEYTF EQTHDQIVDD AISIDQLIWD GQLSTTDCLS STTLLDFNEY DELLQYTVMA 300 NNKNNLYSCV DGQGDSTDDI GSGEKDFFSD LNSLLCDFDV MESQQIDI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849481.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g79700 isoform X1 | ||||
Swissprot | Q94AN4 | 8e-93 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0K9QHQ5 | 0.0 | A0A0K9QHQ5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687653.1 | 1e-165 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-95 | AP2 family protein |
Publications ? help Back to Top | |||
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