PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_177870_fmxe.t1
Common NameSOVF_177870
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 345aa    MW: 39417.5 Da    PI: 5.6716
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_177870_fmxe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-1145101155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +  Aa+a++ a++k++g
  Sp_177870_fmxe.t1  45 SKYRGVTRHRWTGRYEAHLWDkECWNDtQKKKGRQGAYDDEATAARAYDMAALKYWG 101
                        89*******************99998887766677*****99*************98 PP
2AP249.31.2e-15144195155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa a++ a+ +++g
  Sp_177870_fmxe.t1 144 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAATAYDMAAIQYRG 195
                        89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.64E-1645108No hitNo description
SuperFamilySSF541714.64E-1445111IPR016177DNA-binding domain
PfamPF008473.0E-745101IPR001471AP2/ERF domain
PROSITE profilePS5103217.75446109IPR001471AP2/ERF domain
SMARTSM003801.9E-1746115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-1246110IPR001471AP2/ERF domain
PRINTSPR003673.1E-64758IPR001471AP2/ERF domain
CDDcd000183.24E-24144205No hitNo description
SuperFamilySSF541717.85E-18144205IPR016177DNA-binding domain
PfamPF008472.9E-11144195IPR001471AP2/ERF domain
PROSITE profilePS5103218.215145203IPR001471AP2/ERF domain
SMARTSM003802.4E-25145209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-18145204IPR001471AP2/ERF domain
PRINTSPR003673.1E-6185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAKAPIKRKQ KSNSDDNVKI STTSTKSNKR TRKCLPRETP FQRSSKYRGV TRHRWTGRYE  60
AHLWDKECWN DTQKKKGRQG AYDDEATAAR AYDMAALKYW GKETILNFSL SNYENEMKEM  120
DGLSREEYLG SLRRKSNGFS RGVSKYRGVA RHHHNGRWEA RIGRVLGNKY LYLGTFATQE  180
EAATAYDMAA IQYRGLNAVT NFDLSHYINN MEKPNNSCDD HQPISPNDVD LSTSTCSSNQ  240
GLLEYTFEQT HDQIVDDAIS IDQLIWDGQL STTDCLSSTT LLDFNEYDEL LQYTVMANNK  300
NNLYSCVDGQ GDSTDDIGSG EKDFFSDLNS LLCDFDVMES QQIDI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849482.10.0AP2-like ethylene-responsive transcription factor At1g79700 isoform X2
SwissprotQ94AN43e-88AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0K9QJA90.0A0A0K9QJA9_SPIOL; Uncharacterized protein
STRINGXP_010687653.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.24e-91AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]