PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_175790_efrn.t1
Common NameSOVF_175790
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 476aa    MW: 52829.9 Da    PI: 6.4608
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_175790_efrn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.42.9e-49291801128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee..............v.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                        lppGfrFhPtdeel+++yL+ kv +++++++               v + evd++++ePwdLp+++k +e+ewy Fs rd+ky++g r+nra
  Sp_175790_efrn.t1  29 LPPGFRFHPTDEELITFYLASKVFNTTTTTTAtnntttnlflsnsdVqMVEVDLTRCEPWDLPERAKMGEREWYLFSLRDRKYPSGLRTNRA 120
                        79*********************9999444334566677777777755***************99999************************ PP

                NAM  78 tksgyWkatgkdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        t++gyWkatgkd++v++          +g l+g+kktLvfy+grap+g+kt+Wvmheyrl
  Sp_175790_efrn.t1 121 TETGYWKATGKDRQVYAGgittaaggaGGVLIGMKKTLVFYQGRAPRGVKTSWVMHEYRL 180
                        *****************87766666666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5725203IPR003441NAC domain
PROSITE profilePS5100553.57129203IPR003441NAC domain
PfamPF023658.0E-2630180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MWRVEDVLKD LKEEGVYGNC CEKEESTGLP PGFRFHPTDE ELITFYLASK VFNTTTTTTA  60
TNNTTTNLFL SNSDVQMVEV DLTRCEPWDL PERAKMGERE WYLFSLRDRK YPSGLRTNRA  120
TETGYWKATG KDRQVYAGGI TTAAGGAGGV LIGMKKTLVF YQGRAPRGVK TSWVMHEYRL  180
DGHFSSFRLS SKEEWVICRI CHKNAEKKLS PLIIHPPPSP PPTPQRRPLS PFLSSLPPLA  240
DPPSTTQEVA DTPSQHRNYA NSHDLLHSLL LNPLPNFSSI SGSNTIFPPL NTTTTNTTTT  300
AASIDMSPSS TLFKSFHHPS LCCLSSTTTN TNTNTNTNTT AAVASSTTAS DVTKQWQPQQ  360
HWLDRICPQN EYMIQNQYHH DPVNFNQMMD PQPLPNTYPT TTTTTISSTA AIGNNNHDDE  420
DGDAAVHLEM SPSVAVAALD WMLNHTINNN NTNDNHPHPP PAAAAAAESW CFQIHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-46222068171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852146.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8514e-78NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0K9QIE00.0A0A0K9QIE0_SPIOL; Uncharacterized protein
STRINGXP_010686786.11e-135(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-73NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]