PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_175350_uqhr.t1 | ||||||||
Common Name | SOVF_175350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WRKY | ||||||||
Protein Properties | Length: 427aa MW: 46775.3 Da PI: 7.5133 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.2 | 3e-27 | 191 | 249 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++pr+YYrC+s gC+++k+vers dp + ++tY+++H+h+ Sp_175350_uqhr.t1 191 NDKWAWRKYGQKPIKGSPYPRNYYRCSSIkGCKARKQVERSPIDPLIYIVTYTDHHHHP 249 7*************************9987****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.9E-29 | 177 | 251 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-25 | 184 | 251 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-31 | 190 | 250 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.287 | 191 | 251 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-23 | 191 | 249 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MGETTEINDC WSLLAVVKEC ARKAKLRADQ STLTATTTTT ATTATTTTTA ANHGCPGTSQ 60 SYSQNPFYNQ FVPKNNSVGF MLPSAAGVAP AADGSVSEDE LTNLYKPFLM TYHGPVISTT 120 IKAEPVVEVS GINSSNNNLD LLIDQQNLHL RNFQISPKQS SSSTAVGCIY KKKKFEDRRV 180 VKYTLEELSK NDKWAWRKYG QKPIKGSPYP RNYYRCSSIK GCKARKQVER SPIDPLIYIV 240 TYTDHHHHPC PPTRNSSGPR VKITMPDPIP SPKIESPTSI VPVPKYGYGL SGNNGVKIEF 300 EDLDGEKSFG SGSMDEDHDI SMADSGTLTG MEQLNGGGKC PSPSSSGHSN SYYYNENHVG 360 YYNKGCDPNV KMEVQLEENG LSGYDIGIRE MYGSAPATLA EAHEAPSNMG RQNIWGNGVN 420 KAQTFFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-16 | 191 | 252 | 15 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021844186.1 | 0.0 | probable WRKY transcription factor 27 | ||||
TrEMBL | A0A0K9QIJ9 | 0.0 | A0A0K9QIJ9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010671600.1 | 1e-126 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 4e-33 | WRKY DNA-binding protein 27 |