PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB

Protein Properties

Length: 309aa MW: 35153.7 Da PI: 5.9055

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_174630_khzi.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	8.9e-19	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Sp_174630_khzi.t1 24 RGPWTVEEDLALINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 71 89********************************************97 PP
2	Myb_DNA-binding	50.6	4.5e-16	77	120	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Sp_174630_khzi.t1 77 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 120 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.998	19	71	IPR017930	Myb domain
SuperFamily	SSF46689	1.57E-31	21	118	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-16	23	73	IPR001005	SANT/Myb domain
Pfam	PF00249	7.5E-17	24	71	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-23	25	78	IPR009057	Homeodomain-like
CDD	cd00167	9.30E-13	26	71	No hit	No description
PROSITE profile	PS51294	22.917	72	126	IPR017930	Myb domain
SMART	SM00717	2.9E-14	76	124	IPR001005	SANT/Myb domain
Pfam	PF00249	7.5E-15	77	120	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-22	79	125	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDVNINTGKS TSSLSSEDEL DLRRGPWTVE EDLALINYIA THGEGRWNSL ARCAGLKRTG 60 KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS KIAQYLPGRT DNEIKNYWRT 120 RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAATT TEPHTTATAT TSGGSSTTTV 180 NGGPTMGFTD NFIHAPVNSN FTPENSGNSS ESFGTTHVSD FGDYYGIPVN NQSVSQEYYQ 240 GNQVNYGGDN SLTSPNCNYL NNQGMDFQGV DNYMEQNSHQ NWSFGLEDTT DNLWNVEDIY 300 VLQQQFNNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-25	21	118	24	120	MYB TRANSFORMING PROTEIN
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835435.1	0.0	transcription factor MYB108 isoform X1
Refseq	XP_021835436.1	0.0	transcription factor MYB108 isoform X2
Swissprot	Q9FGY3	2e-95	MYB78_ARATH; Transcription factor MYB78
TrEMBL	A0A0K9QKB4	0.0	A0A0K9QKB4_SPIOL; Uncharacterized protein
STRING	XP_010666321.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	4e-89	myb domain protein 78

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]