PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_174630_khzi.t1
Common NameSOVF_174630
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 309aa    MW: 35153.7 Da    PI: 5.9055
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_174630_khzi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.28.9e-192471148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Sp_174630_khzi.t1 24 RGPWTVEEDLALINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 71
                       89********************************************97 PP
2Myb_DNA-binding50.64.5e-1677120146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Sp_174630_khzi.t1  77 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 120
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9981971IPR017930Myb domain
SuperFamilySSF466891.57E-3121118IPR009057Homeodomain-like
SMARTSM007173.1E-162373IPR001005SANT/Myb domain
PfamPF002497.5E-172471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-232578IPR009057Homeodomain-like
CDDcd001679.30E-132671No hitNo description
PROSITE profilePS5129422.91772126IPR017930Myb domain
SMARTSM007172.9E-1476124IPR001005SANT/Myb domain
PfamPF002497.5E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2279125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDVNINTGKS TSSLSSEDEL DLRRGPWTVE EDLALINYIA THGEGRWNSL ARCAGLKRTG  60
KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS KIAQYLPGRT DNEIKNYWRT  120
RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAATT TEPHTTATAT TSGGSSTTTV  180
NGGPTMGFTD NFIHAPVNSN FTPENSGNSS ESFGTTHVSD FGDYYGIPVN NQSVSQEYYQ  240
GNQVNYGGDN SLTSPNCNYL NNQGMDFQGV DNYMEQNSHQ NWSFGLEDTT DNLWNVEDIY  300
VLQQQFNNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-252111824120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835435.10.0transcription factor MYB108 isoform X1
RefseqXP_021835436.10.0transcription factor MYB108 isoform X2
SwissprotQ9FGY32e-95MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A0K9QKB40.0A0A0K9QKB4_SPIOL; Uncharacterized protein
STRINGXP_010666321.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-89myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]