PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_174090_kgtk.t1

Common Name

SOVF_174090

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 349aa MW: 38199.8 Da PI: 5.8666

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_174090_kgtk.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.9e-09	187	234	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + ++++++Lq Sp_174090_kgtk.t1 187 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQYLQ 234 8***********************9....899999***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-15	181	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.07E-8	181	238	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.7E-15	183	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.437	183	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	187	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-7	189	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MESVSGAELR SMGLENYPFG EEFQKLIIAP ESGNSFTALL ELPPNQAMEL LTDNSSGGGG 60 GGAGGSSGGG EVVKRHRISA YNHSLSSLPA LPSNRALIER AAKYSVFASE ESSPELKVKA 120 EPIDEDGSNP NSSSDPTAGS ESEKPLKRKE REKKGKGSSK KNKTTSEDDE KLPYVHVRAR 180 RGQATDSHSL AERARREKIN ARMKLLQELV PGCNKISGTA LVLDEIINHV QYLQRQVEYL 240 SMRLAAVNPR IDFNLDSLIS AGTESMMDCN FPNMAMAMPL MWPEIHANGD RQQFQQPWHH 300 LESLSQPVWI KEENQPNLVA SENSPMTYES PANSAIAASL HSSQLKTEL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MESVSGAELR SMGLENYPFG EEFQKLIIAP ESGNSFTALL ELPPNQAMEL LTDNSSGGGG  60
GGAGGSSGGG EVVKRHRISA YNHSLSSLPA LPSNRALIER AAKYSVFASE ESSPELKVKA  120
EPIDEDGSNP NSSSDPTAGS ESEKPLKRKE REKKGKGSSK KNKTTSEDDE KLPYVHVRAR  180
RGQATDSHSL AERARREKIN ARMKLLQELV PGCNKISGTA LVLDEIINHV QYLQRQVEYL  240
SMRLAAVNPR IDFNLDSLIS AGTESMMDCN FPNMAMAMPL MWPEIHANGD RQQFQQPWHH  300
LESLSQPVWI KEENQPNLVA SENSPMTYES PANSAIAASL HSSQLKTEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860314.1	0.0	transcription factor bHLH48
Swissprot	Q3EAI1	1e-77	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A0K9QKV5	0.0	A0A0K9QKV5_SPIOL; Uncharacterized protein
STRING	XP_010672733.1	1e-175	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	5e-82	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]